Os02g0771500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pap1p; poly A polymerase (Eukaryotic type).
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Os02g0771500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pap1p; poly A polymerase (Eukaryotic type).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 181.79 | 0.633 | 6.42 | 1.05 | 2.97 | 1.07 | -1.66 | -1.04 | 0.442 | 21.4 | 1016 | 4304 | -- | -- |
| 182.31 | 0.629 | 6.43 | 0.968 | 2.98 | 1.44 | -1.68 | -- | 0.442 | 21.4 | 1016 | 4299 | -- | -- |
| 191.58 | 0.645 | 6.42 | 1.11 | 2.98 | 1 | -- | -1.07 | 0.435 | 21.3 | 1016 | 4381 | -- | -- |
| 192.02 | 0.645 | 6.43 | 1.06 | 2.98 | 1.4 | -- | -- | 0.439 | 21.4 | 1016 | 4384 | -- | -- |
| 708.99 | 1.24 | 6.33 | 1.14 | -- | 0.934 | -- | -1.1 | 0.454 | -- | 1015 | 4460 | -- | -- |
| 199.37 | 0.662 | 6.45 | 0.773 | 2.98 | -- | -1.63 | -- | 0.333 | 21.3 | -- | -- | -- | -- |
| 208.88 | 0.677 | 6.45 | 0.832 | 2.98 | -- | -- | -- | 0.334 | 21.3 | -- | -- | -- | -- |
| 710.25 | 1.24 | 6.34 | 1.07 | -- | 1.3 | -- | -- | 0.437 | -- | 1015 | 4423 | -- | -- |
| 219.42 | 0.69 | 6.46 | -- | 2.99 | 0.911 | -- | -- | 0.292 | 21.4 | 1016 | 4298 | -- | -- |
| 727.77 | 1.26 | 6.37 | 0.845 | -- | -- | -- | -- | 0.322 | -- | -- | -- | -- | -- |
| 227.11 | 0.705 | 6.47 | -- | 2.98 | -- | -- | -- | 0.242 | 21.3 | -- | -- | -- | -- |
| 736.07 | 1.26 | 6.37 | -- | -- | 0.76 | -- | -- | 0.303 | -- | 1014 | 4335 | -- | -- |
| 746.63 | 1.28 | 6.39 | -- | -- | -- | -- | -- | 0.228 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 169.49 | humidity | 70 | 30 | > th | dose dependent | rect. | 10 | 10 |
| 5 | 171.87 | humidity | 70 | 30 | > th | dose dependent | rect. | 8 | 12 |
| 8 | 172.96 | humidity | 80 | 720 | > th | dose dependent | rect. | 10 | 4 |
| 9 | 173.19 | humidity | 80 | 10 | > th | dose independent | rect. | 10 | 10 |
| 15 | 173.69 | humidity | 80 | 720 | > th | dose dependent | rect. | 11 | 2 |
| 24 | 174.22 | humidity | 70 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 27 | 174.36 | humidity | 80 | 30 | > th | dose dependent | rect. | 10 | 6 |
| 39 | 174.87 | humidity | 80 | 10 | > th | dose independent | rect. | 10 | 6 |
| 48 | 175.08 | humidity | 80 | 10 | > th | dose independent | rect. | 8 | 12 |
| 68 | 175.69 | humidity | 80 | 720 | > th | dose independent | rect. | 10 | 3 |
| 69 | 175.76 | humidity | 70 | 1440 | > th | dose dependent | rect. | 7 | 5 |
| 72 | 175.84 | humidity | 70 | 10 | > th | dose dependent | rect. | 10 | 19 |
| 87 | 176.03 | humidity | 70 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 114 | 176.47 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 2 |
| 167 | 177.52 | humidity | 80 | 720 | < th | dose independent | rect. | 10 | 4 |
| 182 | 177.72 | humidity | 80 | 720 | < th | dose independent | rect. | 20 | 19 |
| 198 | 177.89 | humidity | 80 | 720 | < th | dose independent | rect. | 9 | 6 |
| 216 | 178.22 | humidity | 80 | 720 | > th | dose independent | rect. | 21 | 18 |
| 256 | 178.86 | humidity | 70 | 30 | > th | dose dependent | sin | 21 | NA |
| 281 | 179.15 | humidity | 90 | 1440 | < th | dose dependent | rect. | 4 | 8 |
| 306 | 179.29 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 9 |
| 313 | 179.33 | radiation | 1 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 323 | 179.45 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 9 |
| 336 | 179.51 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 12 |
| 340 | 179.52 | humidity | 80 | 1440 | < th | dose independent | rect. | 22 | 14 |
| 359 | 179.59 | humidity | 70 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 374 | 179.71 | humidity | 80 | 720 | < th | dose independent | rect. | 3 | 12 |
| 432 | 180.05 | temperature | 25 | 10 | < th | dose dependent | sin | 19 | NA |
| 467 | 180.34 | temperature | 10 | 30 | > th | dose dependent | rect. | 5 | 23 |
| 475 | 180.39 | temperature | 30 | 10 | < th | dose dependent | sin | 17 | NA |
| 491 | 180.47 | humidity | 70 | 30 | > th | dose independent | rect. | 11 | 18 |
| 496 | 180.49 | temperature | 15 | 10 | > th | dose dependent | rect. | 5 | 21 |
| 546 | 180.71 | radiation | 1 | 30 | < th | dose dependent | rect. | 23 | 21 |
| 563 | 180.76 | radiation | 1 | 30 | < th | dose independent | rect. | 21 | 23 |
| 618 | 180.99 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 1 |
| 619 | 180.99 | radiation | 1 | 720 | < th | dose dependent | rect. | 10 | 1 |
| 622 | 181.01 | temperature | 20 | 720 | < th | dose independent | rect. | 9 | 6 |
| 641 | 181.08 | humidity | 80 | 10 | > th | dose independent | rect. | 23 | 21 |
| 694 | 181.32 | humidity | 80 | 1440 | < th | dose independent | sin | 6 | NA |
| 714 | 181.39 | humidity | 70 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 720 | 181.45 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 12 |
| 724 | 181.46 | humidity | 70 | 720 | > th | dose dependent | sin | 0 | NA |
| 729 | 181.49 | humidity | 80 | 720 | > th | dose independent | rect. | 6 | 21 |
| 786 | 181.75 | temperature | 15 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 794 | 181.78 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 2 |
| 796 | 181.79 | radiation | 1 | 30 | < th | dose independent | rect. | 23 | 21 |
| 798 | 181.80 | humidity | 80 | 720 | < th | dose independent | sin | 2 | NA |
| 822 | 181.91 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 5 |
| 824 | 181.91 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 5 |
| 838 | 181.99 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 19 |
| 839 | 182.00 | humidity | 80 | 720 | < th | dose independent | rect. | 9 | 23 |
| 869 | 182.10 | atmosphere | 1015 | 4320 | > th | dose dependent | sin | 13 | NA |
| 870 | 182.11 | radiation | 20 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 887 | 182.14 | temperature | 20 | 720 | < th | dose independent | rect. | 11 | 2 |
| 892 | 182.16 | temperature | 15 | 4320 | > th | dose independent | rect. | 19 | 2 |
| 894 | 182.16 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 7 | 19 |
| 895 | 182.16 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 13 | 19 |
| 916 | 182.19 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 15 | 16 |
| 928 | 182.21 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 948 | 182.22 | temperature | 15 | 90 | > th | dose dependent | rect. | 11 | 14 |
| 957 | 182.24 | temperature | 10 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 958 | 182.24 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 13 |
| 978 | 182.30 | temperature | 20 | 720 | > th | dose independent | rect. | 9 | 6 |
| 989 | 182.32 | humidity | 80 | 720 | < th | dose independent | rect. | 9 | 17 |