BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0771500 Os02g0771500|AK106018
(91 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G32850.8 | chr4:15850134-15854443 FORWARD LENGTH=766 106 2e-24
AT2G25850.2 | chr2:11026123-11030440 REVERSE LENGTH=801 105 4e-24
AT1G17980.1 | chr1:6187742-6191418 REVERSE LENGTH=714 104 9e-24
AT3G06560.1 | chr3:2044443-2047034 FORWARD LENGTH=508 74 2e-14
>AT4G32850.8 | chr4:15850134-15854443 FORWARD LENGTH=766
Length = 765
Score = 106 bits (265), Expect = 2e-24, Method: Composition-based stats.
Identities = 45/61 (73%), Positives = 53/61 (86%)
Query: 9 HGIRVADEILRLVPDTAAFRTMLRCVKHWAKARGVYSNVAGFLGGIGWAILVARVCQLYP 68
+G RVAD+IL+LVP+ FRT LRC+K+WAK RGVYSNV GFLGG+ WA+LVARVCQLYP
Sbjct: 204 NGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSNVTGFLGGVNWALLVARVCQLYP 263
Query: 69 N 69
N
Sbjct: 264 N 264
>AT2G25850.2 | chr2:11026123-11030440 REVERSE LENGTH=801
Length = 800
Score = 105 bits (262), Expect = 4e-24, Method: Composition-based stats.
Identities = 43/61 (70%), Positives = 53/61 (86%)
Query: 9 HGIRVADEILRLVPDTAAFRTMLRCVKHWAKARGVYSNVAGFLGGIGWAILVARVCQLYP 68
+G RVAD+IL+LVP++ FRT LRC+K+WAK RGVYSNV GFLGG+ WA+LVAR+CQ YP
Sbjct: 206 NGCRVADQILKLVPNSEHFRTTLRCLKYWAKKRGVYSNVTGFLGGVNWALLVARLCQFYP 265
Query: 69 N 69
N
Sbjct: 266 N 266
>AT1G17980.1 | chr1:6187742-6191418 REVERSE LENGTH=714
Length = 713
Score = 104 bits (259), Expect = 9e-24, Method: Composition-based stats.
Identities = 44/61 (72%), Positives = 52/61 (85%)
Query: 9 HGIRVADEILRLVPDTAAFRTMLRCVKHWAKARGVYSNVAGFLGGIGWAILVARVCQLYP 68
+G RV D+ILRLVP+ FRT LRC++ WAK RGVYSNV+GFLGGI WA+LVAR+CQLYP
Sbjct: 194 NGCRVTDQILRLVPNIQNFRTTLRCMRFWAKRRGVYSNVSGFLGGINWALLVARICQLYP 253
Query: 69 N 69
N
Sbjct: 254 N 254
>AT3G06560.1 | chr3:2044443-2047034 FORWARD LENGTH=508
Length = 507
Score = 73.6 bits (179), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/60 (56%), Positives = 41/60 (68%)
Query: 10 GIRVADEILRLVPDTAAFRTMLRCVKHWAKARGVYSNVAGFLGGIGWAILVARVCQLYPN 69
G+R IL+LVP F+++LRCVK WAK RGVY N+ GFLGG+ AIL A VC PN
Sbjct: 183 GVRANKCILQLVPSLELFQSLLRCVKLWAKRRGVYGNLNGFLGGVHMAILAAFVCGYQPN 242
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.142 0.474
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,519,137
Number of extensions: 44031
Number of successful extensions: 127
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 4
Length of query: 91
Length of database: 11,106,569
Length adjustment: 62
Effective length of query: 29
Effective length of database: 9,406,777
Effective search space: 272796533
Effective search space used: 272796533
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 104 (44.7 bits)