Os02g0227400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Poly(A) polymerase, central region domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0227400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Poly(A) polymerase, central region domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.87 | 0.293 | 12.1 | -1.71 | 0.266 | 0.711 | -0.0662 | -1.45 | -0.19 | 9.07 | 21.63 | 6343 | -- | -- |
| 39.11 | 0.291 | 12.1 | -1.46 | 0.268 | 0.999 | -0.0457 | -- | -0.157 | 9.17 | 11.63 | 7812 | -- | -- |
| 38.87 | 0.29 | 12.1 | -1.75 | 0.264 | 0.716 | -- | -1.59 | -0.2 | 8.97 | 21.95 | 6308 | -- | -- |
| 39.1 | 0.291 | 12.1 | -1.44 | 0.255 | 0.974 | -- | -- | -0.144 | 9.21 | 11.79 | 7715 | -- | -- |
| 42.09 | 0.302 | 12.1 | -1.69 | -- | 0.689 | -- | -1.24 | -0.225 | -- | 21.33 | 7352 | -- | -- |
| 54.5 | 0.346 | 12 | -0.94 | 0.229 | -- | -0.0872 | -- | 0.124 | 9.04 | -- | -- | -- | -- |
| 54.53 | 0.346 | 12 | -0.943 | 0.23 | -- | -- | -- | 0.124 | 8.94 | -- | -- | -- | -- |
| 42.45 | 0.303 | 12.1 | -1.43 | -- | 0.949 | -- | -- | -0.129 | -- | 10 | 7351 | -- | -- |
| 75.22 | 0.406 | 12 | -- | 0.238 | 0.509 | -- | -- | 0.169 | 6.87 | 11.79 | 7715 | -- | -- |
| 57.55 | 0.354 | 12 | -0.943 | -- | -- | -- | -- | 0.126 | -- | -- | -- | -- | -- |
| 77.98 | 0.413 | 12 | -- | 0.229 | -- | -- | -- | 0.229 | 9.25 | -- | -- | -- | -- |
| 72.9 | 0.398 | 12 | -- | -- | -0.434 | -- | -- | 0.376 | -- | 17.2 | 47520 | -- | -- |
| 81.02 | 0.42 | 12 | -- | -- | -- | -- | -- | 0.23 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.45 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 4 | 40.00 | wind | 3 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 5 | 40.00 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 6 | 40.01 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 7 | 40.02 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 10 | 40.09 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 27 | 40.23 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 37 | 40.35 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 42 | 40.42 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 51 | 40.49 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 52 | 40.49 | wind | 5 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 54 | 40.51 | temperature | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 58 | 40.54 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 60 | 40.56 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 20 |
| 73 | 40.62 | wind | 5 | 43200 | > th | dose dependent | rect. | 8 | 9 |
| 74 | 40.62 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 94 | 40.66 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 7 |
| 95 | 40.66 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 12 |
| 110 | 40.69 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 6 |
| 136 | 40.73 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 4 |
| 137 | 40.73 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 6 |
| 151 | 40.75 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 169 | 40.77 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 10 |
| 189 | 40.79 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 6 |
| 197 | 40.80 | wind | 5 | 43200 | > th | dose dependent | sin | 23 | NA |
| 218 | 40.81 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 230 | 40.83 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 240 | 40.84 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 262 | 40.86 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 6 |
| 266 | 40.86 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 267 | 40.86 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 273 | 40.86 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 275 | 40.87 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 320 | 40.90 | temperature | 20 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 342 | 40.92 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 7 |
| 345 | 40.92 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 358 | 40.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 362 | 40.93 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 375 | 40.94 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 407 | 40.96 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 16 |
| 412 | 40.96 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 448 | 40.98 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 3 |
| 466 | 40.99 | temperature | 20 | 1440 | > th | dose dependent | sin | 2 | NA |
| 523 | 41.01 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 540 | 41.02 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 22 |
| 542 | 41.03 | wind | 7 | 43200 | > th | dose independent | sin | 2 | NA |
| 543 | 41.03 | wind | 7 | 43200 | < th | dose independent | sin | 1 | NA |
| 601 | 41.06 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 662 | 41.09 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 723 | 41.11 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 13 |
| 741 | 41.12 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 748 | 41.12 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 763 | 41.13 | temperature | 25 | 4320 | > th | dose independent | rect. | 9 | 3 |
| 796 | 41.14 | temperature | 25 | 14400 | < th | dose independent | rect. | 15 | 5 |
| 835 | 41.15 | temperature | 20 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 869 | 41.16 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 914 | 41.17 | wind | 7 | 43200 | > th | dose independent | rect. | 2 | 19 |
| 929 | 41.18 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 932 | 41.18 | temperature | 25 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 935 | 41.18 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 13 |
| 970 | 41.19 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |