Os06g0558700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Poly(A) polymerase.
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Os06g0558700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Poly(A) polymerase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.92 | 0.248 | 13.7 | -0.404 | 0.683 | 0.361 | -0.139 | 2.27 | 0.237 | 17.5 | 29.7 | 1731 | -- | -- |
| 28.38 | 0.248 | 13.6 | 0.0104 | 0.711 | 0.604 | -0.1 | -- | 0.311 | 17.5 | 29.7 | 1745 | -- | -- |
| 27.93 | 0.246 | 13.7 | -0.411 | 0.685 | 0.365 | -- | 2.22 | 0.243 | 17.5 | 29.7 | 1736 | -- | -- |
| 28.42 | 0.248 | 13.6 | 0.0183 | 0.712 | 0.614 | -- | -- | 0.313 | 17.5 | 29.66 | 1761 | -- | -- |
| 48.83 | 0.325 | 13.7 | -0.455 | -- | 0.283 | -- | 2.37 | 0.213 | -- | 29.9 | 2828 | -- | -- |
| 41.32 | 0.301 | 13.6 | -0.147 | 0.662 | -- | -0.198 | -- | 0.331 | 17.3 | -- | -- | -- | -- |
| 41.41 | 0.301 | 13.6 | -0.147 | 0.661 | -- | -- | -- | 0.33 | 17.4 | -- | -- | -- | -- |
| 49.38 | 0.327 | 13.6 | 0.023 | -- | 0.545 | -- | -- | 0.221 | -- | 29.8 | 5659 | -- | -- |
| 28.43 | 0.248 | 13.6 | -- | 0.71 | 0.614 | -- | -- | 0.313 | 17.5 | 29.67 | 1761 | -- | -- |
| 64.2 | 0.374 | 13.6 | -0.17 | -- | -- | -- | -- | 0.314 | -- | -- | -- | -- | -- |
| 41.98 | 0.303 | 13.6 | -- | 0.664 | -- | -- | -- | 0.346 | 17.4 | -- | -- | -- | -- |
| 49.17 | 0.327 | 13.6 | -- | -- | 0.564 | -- | -- | 0.28 | -- | 29.7 | 5667 | -- | -- |
| 64.96 | 0.376 | 13.6 | -- | -- | -- | -- | -- | 0.333 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.16 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 3 | 27.28 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 4 | 27.29 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 6 | 27.30 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 16 | 2 |
| 10 | 27.41 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 17 | 27.52 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 47 | 27.59 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 51 | 27.64 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 59 | 27.68 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 5 |
| 61 | 27.70 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 19 |
| 66 | 27.75 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 14 | 19 |
| 70 | 27.77 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 71 | 27.77 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 17 | 11 |
| 78 | 27.78 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 17 | 7 |
| 86 | 27.79 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 87 | 27.79 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 106 | 27.81 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 132 | 27.84 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 148 | 27.86 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 149 | 27.86 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 188 | 27.98 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 271 | 28.10 | temperature | 30.0 | 14400 | < th | dose independent | sin | 12 | NA |
| 272 | 28.10 | humidity | 70.0 | 14400 | < th | dose independent | sin | 12 | NA |
| 281 | 28.12 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 10 | 6 |
| 285 | 28.13 | temperature | 30.0 | 14400 | > th | dose independent | sin | 12 | NA |
| 347 | 28.19 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 10 | 6 |
| 348 | 28.19 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 20 | 20 |
| 351 | 28.19 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 357 | 28.20 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 2 | 14 |
| 388 | 28.21 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 12 | 16 |
| 398 | 28.22 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 414 | 28.23 | humidity | 70.0 | 14400 | > th | dose independent | sin | 12 | NA |
| 415 | 28.23 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 419 | 28.23 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 441 | 28.25 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 471 | 28.26 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 487 | 28.27 | humidity | 70.0 | 14400 | < th | dose dependent | sin | 13 | NA |
| 516 | 28.29 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 544 | 28.31 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 18 | 23 |
| 546 | 28.32 | temperature | 30.0 | 1440 | < th | dose independent | sin | 2 | NA |
| 549 | 28.32 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 8 | 9 |
| 569 | 28.33 | temperature | 30.0 | 14400 | > th | dose independent | no | NA | NA |
| 667 | 28.34 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 670 | 28.34 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 8 | 9 |
| 698 | 28.34 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 10 | 23 |
| 722 | 28.35 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 8 | 21 |
| 730 | 28.36 | temperature | 30.0 | 14400 | < th | dose independent | no | NA | NA |
| 852 | 28.36 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 10 | 23 |
| 864 | 28.37 | temperature | 30.0 | 1440 | > th | dose independent | sin | 2 | NA |
| 920 | 28.38 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 999 | 28.40 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |