BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0767000 Os02g0767000|AK122109
(423 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0767000 Remorin, C-terminal region domain containing p... 720 0.0
Os08g0471800 Remorin, C-terminal region domain containing p... 265 5e-71
Os09g0456100 Remorin, C-terminal region domain containing p... 263 3e-70
AK101665 81 1e-15
Os03g0120200 Remorin, C-terminal region domain containing p... 78 1e-14
Os02g0116800 Remorin, C-terminal region domain containing p... 69 6e-12
>Os02g0767000 Remorin, C-terminal region domain containing protein
Length = 423
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/410 (89%), Positives = 366/410 (89%)
Query: 14 GTFPSPGTPNYHRHCASTMQYPKGWSSERVPLXXXXXXXXXXXXVVLPFNNGRKLPSKWE 73
GTFPSPGTPNYHRHCASTMQYPKGWSSERVPL VVLPFNNGRKLPSKWE
Sbjct: 14 GTFPSPGTPNYHRHCASTMQYPKGWSSERVPLGGGTNRRYGGSGVVLPFNNGRKLPSKWE 73
Query: 74 DAEKWILSPVSCDGIGRMSAPAPHHRRPKSKSGPLGHPGGIPGAYAAASPFVPCFDGVLA 133
DAEKWILSPVSCDGIGRMSAPAPHHRRPKSKSGPLGHPGGIPGAYAAASPFVPCFDGVLA
Sbjct: 74 DAEKWILSPVSCDGIGRMSAPAPHHRRPKSKSGPLGHPGGIPGAYAAASPFVPCFDGVLA 133
Query: 134 AANFAAHSPFSAGVLMPEHVRNXXXXXXXXXXXXXXXXXXYSAEKDPYILRSASIHAWTE 193
AANFAAHSPFSAGVLMPEHVRN YSAEKDPYILRSASIHAWTE
Sbjct: 134 AANFAAHSPFSAGVLMPEHVRNGDFSSGRGRSGDDGSSRSYSAEKDPYILRSASIHAWTE 193
Query: 194 TLMEASAFANISEETAQDDKLQGLRGETPAISSPIIKKDVATQMSPDDSISSSPKARHSC 253
TLMEASAFANISEETAQDDKLQGLRGETPAISSPIIKKDVATQMSPDDSISSSPKARHSC
Sbjct: 194 TLMEASAFANISEETAQDDKLQGLRGETPAISSPIIKKDVATQMSPDDSISSSPKARHSC 253
Query: 254 SSLPSGHPIKEPNSNALKPEXXXXXXXXXXXXXXWSKRHVTRGSDRRSTNIVEWRKKTIE 313
SSLPSGHPIKEPNSNALKPE WSKRHVTRGSDRRSTNIVEWRKKTIE
Sbjct: 254 SSLPSGHPIKEPNSNALKPEVRDVQVDDQVTVTRWSKRHVTRGSDRRSTNIVEWRKKTIE 313
Query: 314 TRAPSFDEKERESCVSKCKREEAKITAWENLQKAKAEAAIRKLEMKLEKKRSSSMDRILG 373
TRAPSFDEKERESCVSKCKREEAKITAWENLQKAKAEAAIRKLEMKLEKKRSSSMDRILG
Sbjct: 314 TRAPSFDEKERESCVSKCKREEAKITAWENLQKAKAEAAIRKLEMKLEKKRSSSMDRILG 373
Query: 374 KLRTAQKKAQDMRSAVSVSEDQCGVRATKKASYLRRTGKSFSCCFTYRAC 423
KLRTAQKKAQDMRSAVSVSEDQCGVRATKKASYLRRTGKSFSCCFTYRAC
Sbjct: 374 KLRTAQKKAQDMRSAVSVSEDQCGVRATKKASYLRRTGKSFSCCFTYRAC 423
>Os08g0471800 Remorin, C-terminal region domain containing protein
Length = 602
Score = 265 bits (677), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 175/422 (41%), Positives = 235/422 (55%), Gaps = 17/422 (4%)
Query: 14 GTFPSPGTPNYHRHCASTMQYPKGWSSERVPLXXXXXXXXXXXXVVLPFNNGRKLPSKWE 73
G SPGTP+Y+R A+ + Y +GWSSERV L +VLP N GR LPSKWE
Sbjct: 184 GAPTSPGTPSYNRQGATVVGYQQGWSSERVALSSNGQRRHSGNSMVLPHNTGRTLPSKWE 243
Query: 74 DAEKWILSPVSCDGIGRMSAPAPHHRRPKSKSGPLGHPGGIPGAYAAASPFVPCFDGVLA 133
DAE+WI SP + +GR S P RRPK+KSGPLG PG Y++ S D
Sbjct: 244 DAERWIFSPNPSNALGRTSIP--QSRRPKAKSGPLGPPGRFSEPYSSVSSSSYLLD-TGR 300
Query: 134 AANFAAHSPFSAGVLMPEHV--------RNXXXXXXXXXXXXXXXXXXYSAEKDPYILRS 185
N A+SPF AGVL+PEHV R+ + P + S
Sbjct: 301 VGNLTANSPFLAGVLLPEHVCVSSSHAGRDLSGASGEDKSNGMGGRSGEANGAHPAVW-S 359
Query: 186 ASIHAWTETLMEASAFANISEETAQ---DDKLQGLRGETPAISSPIIKKDVATQMSPDDS 242
+ ++ +++S S+E+ Q D++++ T + I +KDVATQ SP+ S
Sbjct: 360 TRVCQRMDSAVQSSPSLPTSQESVQACTDEQIEITTDLTTSSKPEISRKDVATQTSPELS 419
Query: 243 ISSSPKARHSCSSLPSGHPIKEPNSNALKPEXXXXXXXXXXXXXXWSKRHVTRGSDRRST 302
SSSP R S S S +KE S K E WSK+HVTRGS++ ST
Sbjct: 420 RSSSPSGRPSFSRSLSVQQVKELESCFSKLEIRDVQMDDRVTLTRWSKKHVTRGSEKNST 479
Query: 303 NIVEWRKKTIETRAPSFDEKERESCVSKCKREEAKITAWENLQKAKAEAAIRKLEMKLEK 362
NI+EW+KKT+E+++ +++ E C+SK + EEAK+TAWENLQKAKAEAAI+KL MKLEK
Sbjct: 480 NIIEWKKKTVESKSSAWEVTETAKCISKIEGEEAKMTAWENLQKAKAEAAIQKLVMKLEK 539
Query: 363 KRSSSMDRILGKLRTAQKKAQDMRSAVSVSEDQCGVRATKKASYLRRTGK--SFSCCFTY 420
KRS S++RI LR+A +K +RS + + DQ R K+ S+L + G+ S S CFT
Sbjct: 540 KRSYSLERIFNTLRSAHRKTHVIRSTTTTNLDQHISRTVKRPSHLSKNGQMSSLSGCFTC 599
Query: 421 RA 422
A
Sbjct: 600 HA 601
>Os09g0456100 Remorin, C-terminal region domain containing protein
Length = 620
Score = 263 bits (671), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 173/419 (41%), Positives = 237/419 (56%), Gaps = 22/419 (5%)
Query: 15 TFPSPGTPNYHRHCASTMQYPKGWSSERVPLXXXXXXXXXXXXVVLPFNNGRKLPSKWED 74
FPSP TPNY RH +S Y KGWSSERVPL + PF+NGR LPSKWED
Sbjct: 212 VFPSPRTPNYRRHRSSVFGYQKGWSSERVPLASKGNRRYPGSSMAFPFSNGRTLPSKWED 271
Query: 75 AEKWILSPVSCDGIGRMS-APAPHHRRPKSKSGPLGHPGGIPGAYAAASPFVPCFDGVLA 133
AE+WI SP S D + + S APA RRPKSKSGPLG PG G Y++ S G L
Sbjct: 272 AERWIFSPNSSDVLEKTSFAPA---RRPKSKSGPLGPPGKFGGQYSSVSLLDNGRVGHLT 328
Query: 134 AANFAAHSPFSAGVLMPEH-------VRNXXXXXXXXXXXXXXXXXXYSAEKDPYILRSA 186
A +SPF AGVL+PEH + A + +
Sbjct: 329 A-----NSPFLAGVLIPEHYCGEKDNIGRYMSRTAGEEASIGIGGKSCLANGGSHATQYN 383
Query: 187 SIHAWTETLMEASAFANISEETAQDDKLQGLRGETPAISSPII-KKDVATQMSPDDSISS 245
+ +T +E+S ++ + QD+++ G+ E+ +I +PII +KD ATQ SP+ S SS
Sbjct: 384 RVRRRLDTAIESSPSLPSTQASVQDEQV-GITEESASIITPIILRKDAATQTSPNLSRSS 442
Query: 246 SPKARHSCSSLPSGHPIKEPNSNALKPEXXXXXXXXXXXXXXWSKRHVTRGSDRRSTNIV 305
SP L + H ++E N WSK+HVTR S + STN++
Sbjct: 443 SPSVSTPFIHLLTTHQVRE-KENCFSDVIRDVHMDDRVTLTRWSKKHVTRASSKNSTNVI 501
Query: 306 EWRKKTIETRAPSFDEKERESCVSKCKREEAKITAWENLQKAKAEAAIRKLEMKLEKKRS 365
+ +KKT+E+++ S++ E +S +SK +RE+ KITAWE+LQKAKAEAAI+KL MK+EKKRS
Sbjct: 502 DVKKKTVESKSSSWELTEAKS-ISKVEREQEKITAWEHLQKAKAEAAIQKLVMKIEKKRS 560
Query: 366 SSMDRILGKLRTAQKKAQDMRSAVSVSEDQCGVRATKKASYLRRTGK--SFSCCFTYRA 422
SS+D+I LR+AQ++AQ MR + ++D+ K+ S+L + G+ S S CFT A
Sbjct: 561 SSLDKIWNTLRSAQRRAQVMRETAAANQDEQSSGKAKRTSHLNKNGQISSLSGCFTCHA 619
>AK101665
Length = 361
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 66/100 (66%)
Query: 312 IETRAPSFDEKERESCVSKCKREEAKITAWENLQKAKAEAAIRKLEMKLEKKRSSSMDRI 371
+E+RA ++DE ER ++ KREE KI AWEN +K KAE ++K+EMK E+ ++ + +++
Sbjct: 247 LESRAVAWDEAERAKFTARYKREEMKIQAWENHEKRKAELEMKKIEMKAEQMKARAHEKL 306
Query: 372 LGKLRTAQKKAQDMRSAVSVSEDQCGVRATKKASYLRRTG 411
KL A++ A++ R+ ++ R T+KA Y+RRTG
Sbjct: 307 ANKLAAARRMAEEKRATAEAKLNEHAARTTQKADYIRRTG 346
>Os03g0120200 Remorin, C-terminal region domain containing protein
Length = 423
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 66/107 (61%), Gaps = 3/107 (2%)
Query: 313 ETRAPSFDEKERESCVSKCKREEAKITAWENLQKAKAEAAIRKLEMKLEKKRSSSMDRIL 372
E RA ++E E+ +++ +REE KI AWEN QKAK EA ++++E K+E KR+ DR+
Sbjct: 312 EARAADWEEAEKAKYLARFQREEVKIQAWENHQKAKIEAEMKRMEAKIEIKRAREQDRLS 371
Query: 373 GKLRTAQKKAQDMRSAVSVSEDQCGVRATKKASYLRRTG---KSFSC 416
KL A+ KA+ R A ++Q R ++A+ +R+TG S SC
Sbjct: 372 SKLAAARHKAEARREAAESRKNQEAARTEEQAAQIRKTGHIPSSISC 418
>Os02g0116800 Remorin, C-terminal region domain containing protein
Length = 510
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 72/115 (62%)
Query: 309 KKTIETRAPSFDEKERESCVSKCKREEAKITAWENLQKAKAEAAIRKLEMKLEKKRSSSM 368
+K E RA +++E E+ +++ KREE KI AWE+ Q+AK EA +RK+E+ +E+ R+ +
Sbjct: 395 QKVTEIRAAAWEEAEKAKYLARFKREEIKIQAWEDHQRAKIEAEMRKIEVDVERMRARAQ 454
Query: 369 DRILGKLRTAQKKAQDMRSAVSVSEDQCGVRATKKASYLRRTGKSFSCCFTYRAC 423
D+++ +L +A+ A + R+A + + + ++A ++RRTG+ S + C
Sbjct: 455 DKLMSQLASARHTADEKRAAAELKRSRAAAKTAEQADHIRRTGRMPSSIGCWNWC 509
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.127 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,779,228
Number of extensions: 569523
Number of successful extensions: 1513
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1501
Number of HSP's successfully gapped: 10
Length of query: 423
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 319
Effective length of database: 11,605,545
Effective search space: 3702168855
Effective search space used: 3702168855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)