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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0471800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Remorin, C-terminal region domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.27 (0.0531) R2 : 0.402
β1 : -2.16 (0.195) R2dD : 0.171 R2D : 0.0918
β2 : 1.29 (0.13) R2dC : 0.119 R2C : 0.0681
β3 : 2.86 (0.242) R2dE : 0.175 R2E : 0.101
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.466 (0.114) R2dN8 : 0.0321 R2N8 : 0.00891
σ : 0.991
deviance : 453.05
__
_____
C
peak time of C : 21.8
E
wheather : wind
threshold : 1.3
memory length : 99
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.91
open length of G : 0.617

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
450.15 0.997 4.28 -2.59 1.2 3.58 0.203 -9.49 -0.429 22.1 0.9032 106 3.96 0.611
456.69 0.995 4.28 -2.25 1.27 3.23 0.566 -- -0.467 21.6 1.3 95 3.93 0.617
448.54 0.986 4.28 -2.58 1.21 3.57 -- -9.42 -0.425 22.1 0.9072 104 3.97 0.567
453.05 0.991 4.27 -2.16 1.29 2.86 -- -- -0.466 21.8 1.3 99 3.91 0.617
532.09 1.07 4.24 -2.5 -- 3.56 -- -9.41 -0.444 -- 0.9704 96 3.95 0.574
557.45 1.11 4.25 -1.99 1.17 -- 0.535 -- -0.584 0.0311 -- -- -- --
558.65 1.11 4.25 -2.01 1.17 -- -- -- -0.586 23.9 -- -- -- --
537.31 1.08 4.21 -2.19 -- 2.73 -- -- -0.491 -- 1.289 92 3.88 0.683
576.18 1.12 4.25 -- 1.17 2.5 -- -- -0.308 22 1.294 98 3.92 0.625
644.9 1.19 4.23 -1.97 -- -- -- -- -0.57 -- -- -- -- --
664.71 1.21 4.2 -- 1.15 -- -- -- -0.362 23.8 -- -- -- --
653.59 1.19 4.15 -- -- 2.38 -- -- -0.221 -- 0.8494 93 3.9 0.643
747.3 1.28 4.18 -- -- -- -- -- -0.351 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 462.95 wind 1.0 90 < th dose independent rect. 4 1
2 463.10 temperature 30.0 720 > th dose dependent rect. 18 1
16 463.65 wind 1.0 90 < th dose dependent rect. 4 1
32 471.30 temperature 20.0 90 > th dose dependent rect. 4 1
36 473.61 humidity 70.0 720 > th dose independent rect. 19 8
37 474.06 temperature 20.0 90 > th dose independent rect. 4 1
38 474.09 humidity 50.0 1440 < th dose independent rect. 16 1
40 474.74 humidity 50.0 1440 < th dose dependent rect. 16 1
41 475.51 humidity 70.0 720 < th dose independent rect. 19 1
54 476.32 humidity 70.0 720 < th dose independent rect. 18 14
70 477.31 humidity 70.0 720 < th dose dependent rect. 19 1
83 479.08 humidity 70.0 720 < th dose dependent rect. 18 14
97 479.53 atmosphere 1005.0 90 > th dose independent rect. 4 1
99 480.93 temperature 30.0 720 > th dose independent rect. 18 1
114 481.40 wind 3.0 10 < th dose dependent rect. 4 2
119 482.58 humidity 80.0 90 > th dose dependent rect. 4 1
121 482.77 humidity 90.0 90 > th dose independent rect. 4 1
122 483.01 temperature 25.0 90 < th dose independent rect. 4 1
128 484.08 temperature 20.0 10 > th dose dependent rect. 4 2
135 485.26 humidity 70.0 720 > th dose independent rect. 18 14
136 485.28 temperature 20.0 10 > th dose independent rect. 4 2
153 485.62 radiation 1.0 90 < th dose independent rect. 4 1
155 485.64 radiation 10.0 90 < th dose dependent rect. 4 1
156 485.66 precipitation 0.1 90 < th dose independent rect. 4 1
157 485.66 precipitation 0.1 90 < th dose dependent rect. 4 1
161 485.72 wind 9.0 90 < th dose independent rect. 4 1
162 485.72 temperature 10.0 90 > th dose independent rect. 4 1
165 485.72 humidity 50.0 90 > th dose independent rect. 4 1
169 485.72 atmosphere 1010.0 90 < th dose independent rect. 4 1
174 485.72 temperature 10.0 90 > th dose independent rect. 5 23
225 487.08 wind 9.0 90 < th dose independent rect. 5 23
231 488.00 atmosphere 1005.0 10 > th dose independent rect. 4 2
240 488.91 wind 1.0 30 < th dose independent rect. 4 8
246 489.28 atmosphere 995.0 90 > th dose dependent rect. 4 1
247 489.63 atmosphere 1015.0 90 < th dose dependent rect. 4 1
252 490.14 humidity 50.0 1440 > th dose independent rect. 16 1
279 492.34 atmosphere 995.0 4320 > th dose independent rect. 5 1
362 496.01 temperature 30.0 1440 < th dose independent rect. 18 9
392 496.23 temperature 30.0 1440 < th dose independent rect. 18 5
393 496.31 temperature 30.0 1440 < th dose independent rect. 18 2
419 496.73 radiation 1.0 30 < th dose dependent rect. 4 13
423 496.78 humidity 70.0 1440 > th dose independent rect. 18 2
435 497.16 radiation 1.0 720 > th dose dependent rect. 18 1
486 497.82 radiation 1.0 720 > th dose independent rect. 18 11
490 497.90 wind 3.0 10 < th dose dependent rect. 4 8
495 497.98 humidity 70.0 10 > th dose dependent rect. 4 2
497 498.03 radiation 1.0 720 > th dose independent rect. 18 1
512 498.22 humidity 90.0 10 > th dose independent rect. 4 2
517 498.36 precipitation 0.1 90 < th dose independent rect. 5 23
519 498.36 precipitation 0.1 90 < th dose dependent rect. 5 23
598 499.46 temperature 25.0 720 > th dose dependent rect. 21 2
607 499.74 wind 1.0 30 < th dose independent rect. 24 6
621 499.98 humidity 70.0 720 > th dose independent sin 12 NA
638 500.29 wind 1.0 30 < th dose independent rect. 24 12
639 500.32 radiation 10.0 10 < th dose independent rect. 4 2
643 500.40 radiation 20.0 10 < th dose dependent rect. 4 2
664 500.89 radiation 1.0 30 < th dose dependent rect. 4 10
686 501.10 precipitation 0.1 10 < th dose independent rect. 4 2
688 501.10 precipitation 0.1 10 < th dose dependent rect. 4 2
692 501.14 humidity 70.0 1440 < th dose dependent sin 12 NA
704 501.34 wind 9.0 10 < th dose independent rect. 4 2
705 501.34 temperature 10.0 10 > th dose independent rect. 4 2
707 501.34 temperature 30.0 10 < th dose independent rect. 4 2
708 501.34 humidity 50.0 10 > th dose independent rect. 4 2
712 501.34 atmosphere 1010.0 10 < th dose independent rect. 4 2
717 501.34 temperature 10.0 10 > th dose independent rect. 6 22
720 501.37 temperature 30.0 30 < th dose dependent rect. 4 1
724 501.41 wind 9.0 10 < th dose independent rect. 6 22
872 502.61 radiation 1.0 30 < th dose dependent rect. 4 8
890 502.98 wind 7.0 1440 < th dose independent rect. 5 1
892 502.98 temperature 10.0 1440 > th dose independent rect. 5 1
895 502.98 temperature 30.0 1440 < th dose independent rect. 5 1
899 502.98 humidity 50.0 1440 > th dose independent rect. 5 1
909 502.98 atmosphere 1015.0 1440 < th dose independent rect. 5 1
910 502.98 radiation 20.0 1440 < th dose independent rect. 5 1
920 502.98 temperature 10.0 1440 > th dose independent rect. 6 23