BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0471800 Os08g0471800|AK105281
(602 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0471800 Remorin, C-terminal region domain containing p... 1054 0.0
Os09g0456100 Remorin, C-terminal region domain containing p... 570 e-162
Os02g0767000 Remorin, C-terminal region domain containing p... 309 4e-84
Os03g0120200 Remorin, C-terminal region domain containing p... 74 3e-13
AK101665 74 4e-13
>Os08g0471800 Remorin, C-terminal region domain containing protein
Length = 602
Score = 1054 bits (2726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/580 (89%), Positives = 521/580 (89%)
Query: 23 WRKEEAEXXXXXXXXXXXXXXXXXXXXXXLCDSPLPSFVRHRGGPGSDLELDGLPTXXXX 82
WRKEEAE LCDSPLPSFVRHRGGPGSDLELDGLPT
Sbjct: 23 WRKEEAEGGGGGGGGGGGCSASSTSRGSSLCDSPLPSFVRHRGGPGSDLELDGLPTSSSN 82
Query: 83 XXXXXHEEDHGPLQGVKGEGWMQVQGPIKNSAARSTGECQDQRYRLGSVLFHGKNERKQR 142
HEEDHGPLQGVKGEGWMQVQGPIKNSAARSTGECQDQRYRLGSVLFHGKNERKQR
Sbjct: 83 ASSGSHEEDHGPLQGVKGEGWMQVQGPIKNSAARSTGECQDQRYRLGSVLFHGKNERKQR 142
Query: 143 PASVDFGCPSVDRSSTHSPGFLVNGTGAMNKGLSVSSQNKPGAPTSPGTPSYNRQGATVV 202
PASVDFGCPSVDRSSTHSPGFLVNGTGAMNKGLSVSSQNKPGAPTSPGTPSYNRQGATVV
Sbjct: 143 PASVDFGCPSVDRSSTHSPGFLVNGTGAMNKGLSVSSQNKPGAPTSPGTPSYNRQGATVV 202
Query: 203 GYQQGWSSERVALSSNGQRRHSGNSMVLPHNTGRTLPSKWEDAERWIFSPNPSNALGRTS 262
GYQQGWSSERVALSSNGQRRHSGNSMVLPHNTGRTLPSKWEDAERWIFSPNPSNALGRTS
Sbjct: 203 GYQQGWSSERVALSSNGQRRHSGNSMVLPHNTGRTLPSKWEDAERWIFSPNPSNALGRTS 262
Query: 263 IPQSRRPKAKSGPLGPPGRFSEPYXXXXXXXYLLDTGRVGNLTANSPFLAGVLLPEHVCV 322
IPQSRRPKAKSGPLGPPGRFSEPY YLLDTGRVGNLTANSPFLAGVLLPEHVCV
Sbjct: 263 IPQSRRPKAKSGPLGPPGRFSEPYSSVSSSSYLLDTGRVGNLTANSPFLAGVLLPEHVCV 322
Query: 323 SSSHAGRDLSGASGEDKSNGMGGRSGEANGAHPAVWSTRVCQRMDSAVQSSPSLPTSQES 382
SSSHAGRDLSGASGEDKSNGMGGRSGEANGAHPAVWSTRVCQRMDSAVQSSPSLPTSQES
Sbjct: 323 SSSHAGRDLSGASGEDKSNGMGGRSGEANGAHPAVWSTRVCQRMDSAVQSSPSLPTSQES 382
Query: 383 VQACTDEQIEITTDLTTSSKPEISRKDVATQTXXXXXXXXXXXXXXXXXXXXXVQQVKEL 442
VQACTDEQIEITTDLTTSSKPEISRKDVATQT VQQVKEL
Sbjct: 383 VQACTDEQIEITTDLTTSSKPEISRKDVATQTSPELSRSSSPSGRPSFSRSLSVQQVKEL 442
Query: 443 ESCFSKLEIRDVQMDDRVTLTRWSKKHVTRGSEKNSTNIIEWKKKTVESKSSAWEVTETA 502
ESCFSKLEIRDVQMDDRVTLTRWSKKHVTRGSEKNSTNIIEWKKKTVESKSSAWEVTETA
Sbjct: 443 ESCFSKLEIRDVQMDDRVTLTRWSKKHVTRGSEKNSTNIIEWKKKTVESKSSAWEVTETA 502
Query: 503 KCISKIEGEEAKMTAWENLQKAKAEAAIQKLVMKLEKKRSYSLERIFNTLRSAHRKTHVI 562
KCISKIEGEEAKMTAWENLQKAKAEAAIQKLVMKLEKKRSYSLERIFNTLRSAHRKTHVI
Sbjct: 503 KCISKIEGEEAKMTAWENLQKAKAEAAIQKLVMKLEKKRSYSLERIFNTLRSAHRKTHVI 562
Query: 563 RSTTTTNLDQHISRTVKRPSHLSKNGQMSSLSGCFTCHAF 602
RSTTTTNLDQHISRTVKRPSHLSKNGQMSSLSGCFTCHAF
Sbjct: 563 RSTTTTNLDQHISRTVKRPSHLSKNGQMSSLSGCFTCHAF 602
>Os09g0456100 Remorin, C-terminal region domain containing protein
Length = 620
Score = 570 bits (1468), Expect = e-162, Method: Compositional matrix adjust.
Identities = 312/556 (56%), Positives = 376/556 (67%), Gaps = 15/556 (2%)
Query: 53 CDSPLPSFVRHRGGPGSDLELDGLPTXXXXXXXXX---HEEDHGP--LQGVKGEGWMQVQ 107
CDSPL FVR G P +DLE DG+ T H+E+ G L GV W Q+Q
Sbjct: 74 CDSPLAGFVRADGDPDTDLETDGVATPSSNASAAFAEPHDEEEGDEVLCGVVEGDWAQLQ 133
Query: 108 GPIKNSAARSTGECQDQRYRLGSVLFHGKNERKQRPASVDFGCPSVD-RSSTHSPGFLVN 166
P K+ A R+TGEC QR R +VL G+ KQRPAS+DFG S + SPGF+V
Sbjct: 134 EPTKSPADRTTGECLYQRRRSEAVLLQGRKGLKQRPASLDFGSGSPGFNGAPLSPGFVVG 193
Query: 167 GTGAMNKGLSVSSQNKPGAPTSPGTPSYNRQGATVVGYQQGWSSERVALSSNGQRRHSGN 226
G G MNKGL SS + SP TP+Y R ++V GYQ+GWSSERV L+S G RR+ G+
Sbjct: 194 GVGLMNKGLVSSSFIRSDVFPSPRTPNYRRHRSSVFGYQKGWSSERVPLASKGNRRYPGS 253
Query: 227 SMVLPHNTGRTLPSKWEDAERWIFSPNPSNALGRTSIPQSRRPKAKSGPLGPPGRFSEPY 286
SM P + GRTLPSKWEDAERWIFSPN S+ L +TS +RRPK+KSGPLGPPG+F Y
Sbjct: 254 SMAFPFSNGRTLPSKWEDAERWIFSPNSSDVLEKTSFAPARRPKSKSGPLGPPGKFGGQY 313
Query: 287 XXXXXXXYLLDTGRVGNLTANSPFLAGVLLPEHVCVSSSHAGRDLSGASGEDKSNGMGGR 346
LLD GRVG+LTANSPFLAGVL+PEH C + GR +S +GE+ S G+GG+
Sbjct: 314 SSVS----LLDNGRVGHLTANSPFLAGVLIPEHYCGEKDNIGRYMSRTAGEEASIGIGGK 369
Query: 347 SGEANGAHPAVWSTRVCQRMDSAVQSSPSLPTSQESVQACTDEQIEITTDLTTSSKPEIS 406
S ANG A RV +R+D+A++SSPSLP++Q SVQ DEQ+ IT + + P I
Sbjct: 370 SCLANGGSHATQYNRVRRRLDTAIESSPSLPSTQASVQ---DEQVGITEESASIITPIIL 426
Query: 407 RKDVATQTXXXXXXXXXXXXXXXXXXXXXVQQVKELESCFSKLEIRDVQMDDRVTLTRWS 466
RKD ATQT QV+E E+CFS + IRDV MDDRVTLTRWS
Sbjct: 427 RKDAATQTSPNLSRSSSPSVSTPFIHLLTTHQVREKENCFSDV-IRDVHMDDRVTLTRWS 485
Query: 467 KKHVTRGSEKNSTNIIEWKKKTVESKSSAWEVTETAKCISKIEGEEAKMTAWENLQKAKA 526
KKHVTR S KNSTN+I+ KKKTVESKSS+WE+TE AK ISK+E E+ K+TAWE+LQKAKA
Sbjct: 486 KKHVTRASSKNSTNVIDVKKKTVESKSSSWELTE-AKSISKVEREQEKITAWEHLQKAKA 544
Query: 527 EAAIQKLVMKLEKKRSYSLERIFNTLRSAHRKTHVIRSTTTTNLDQHISRTVKRPSHLSK 586
EAAIQKLVMK+EKKRS SL++I+NTLRSA R+ V+R T N D+ S KR SHL+K
Sbjct: 545 EAAIQKLVMKIEKKRSSSLDKIWNTLRSAQRRAQVMRETAAANQDEQSSGKAKRTSHLNK 604
Query: 587 NGQMSSLSGCFTCHAF 602
NGQ+SSLSGCFTCHAF
Sbjct: 605 NGQISSLSGCFTCHAF 620
>Os02g0767000 Remorin, C-terminal region domain containing protein
Length = 423
Score = 309 bits (792), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 183/417 (43%), Positives = 247/417 (59%), Gaps = 15/417 (3%)
Query: 188 SPGTPSYNRQGATVVGYQQGWSSERVALSSNGQRRHSGNSMVLPHNTGRTLPSKWEDAER 247
SPGTP+Y+R A+ + Y +GWSSERV L RR+ G+ +VLP N GR LPSKWEDAE+
Sbjct: 18 SPGTPNYHRHCASTMQYPKGWSSERVPLGGGTNRRYGGSGVVLPFNNGRKLPSKWEDAEK 77
Query: 248 WIFSPNPSNALGRTSIP--QSRRPKAKSGPLGPPGRFSEPYXXXXXXXYLLD-TGRVGNL 304
WI SP + +GR S P RRPK+KSGPLG PG Y D N
Sbjct: 78 WILSPVSCDGIGRMSAPAPHHRRPKSKSGPLGHPGGIPGAYAAASPFVPCFDGVLAAANF 137
Query: 305 TANSPFLAGVLLPEHVCVSSSHAGRDLSGASGEDKSNGMGGRSGEANGAHPAVWSTRVCQ 364
A+SPF AGVL+PEHV +GR G SG+D S+ RS A + S +
Sbjct: 138 AAHSPFSAGVLMPEHVRNGDFSSGR---GRSGDDGSS----RSYSAEKDPYILRSASIHA 190
Query: 365 RMDSAVQSSPSLPTSQESVQACTDEQIEITTDLTTSSKPEISRKDVATQTXXXXXXXXXX 424
++ +++S S+E+ Q D++++ T + I +KDVATQ
Sbjct: 191 WTETLMEASAFANISEETAQ---DDKLQGLRGETPAISSPIIKKDVATQMSPDDSISSSP 247
Query: 425 XXXXXXXXXXXVQQVKELESCFSKLEIRDVQMDDRVTLTRWSKKHVTRGSEKNSTNIIEW 484
+KE S K E+RDVQ+DD+VT+TRWSK+HVTRGS++ STNI+EW
Sbjct: 248 KARHSCSSLPSGHPIKEPNSNALKPEVRDVQVDDQVTVTRWSKRHVTRGSDRRSTNIVEW 307
Query: 485 KKKTVESKSSAWEVTETAKCISKIEGEEAKMTAWENLQKAKAEAAIQKLVMKLEKKRSYS 544
+KKT+E+++ +++ E C+SK + EEAK+TAWENLQKAKAEAAI+KL MKLEKKRS S
Sbjct: 308 RKKTIETRAPSFDEKERESCVSKCKREEAKITAWENLQKAKAEAAIRKLEMKLEKKRSSS 367
Query: 545 LERIFNTLRSAHRKTHVIRSTTTTNLDQHISRTVKRPSHLSKNGQMSSLSGCFTCHA 601
++RI LR+A +K +RS + + DQ R K+ S+L + G+ S S CFT A
Sbjct: 368 MDRILGKLRTAQKKAQDMRSAVSVSEDQCGVRATKKASYLRRTGK--SFSCCFTYRA 422
>Os03g0120200 Remorin, C-terminal region domain containing protein
Length = 423
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 86/157 (54%), Gaps = 11/157 (7%)
Query: 447 SKLEIRDV-QMDDRVTLTRWSKKHVTRGSEKNST---NIIEWKKKTV--ESKSSAWEVTE 500
++ EI D+ Q + T+ W+ K EK++T N+I K + E++++ WE E
Sbjct: 268 TRKEIMDLGQRLGKTTIAAWASKE-----EKSTTSFANVITDKAVEIDREARAADWEEAE 322
Query: 501 TAKCISKIEGEEAKMTAWENLQKAKAEAAIQKLVMKLEKKRSYSLERIFNTLRSAHRKTH 560
AK +++ + EE K+ AWEN QKAK EA ++++ K+E KR+ +R+ + L +A K
Sbjct: 323 KAKYLARFQREEVKIQAWENHQKAKIEAEMKRMEAKIEIKRAREQDRLSSKLAAARHKAE 382
Query: 561 VIRSTTTTNLDQHISRTVKRPSHLSKNGQMSSLSGCF 597
R + +Q +RT ++ + + K G + S C+
Sbjct: 383 ARREAAESRKNQEAARTEEQAAQIRKTGHIPSSISCW 419
>AK101665
Length = 361
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 64/105 (60%)
Query: 489 VESKSSAWEVTETAKCISKIEGEEAKMTAWENLQKAKAEAAIQKLVMKLEKKRSYSLERI 548
+ES++ AW+ E AK ++ + EE K+ AWEN +K KAE ++K+ MK E+ ++ + E++
Sbjct: 247 LESRAVAWDEAERAKFTARYKREEMKIQAWENHEKRKAELEMKKIEMKAEQMKARAHEKL 306
Query: 549 FNTLRSAHRKTHVIRSTTTTNLDQHISRTVKRPSHLSKNGQMSSL 593
N L +A R R+T L++H +RT ++ ++ + G + S
Sbjct: 307 ANKLAAARRMAEEKRATAEAKLNEHAARTTQKADYIRRTGHLPSF 351
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.126 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,691,547
Number of extensions: 863207
Number of successful extensions: 2234
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 2216
Number of HSP's successfully gapped: 8
Length of query: 602
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 495
Effective length of database: 11,448,903
Effective search space: 5667206985
Effective search space used: 5667206985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 159 (65.9 bits)