BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0753300 Os02g0753300|AK065736
(193 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0753300 Lipoxygenase, LH2 domain containing protein 316 6e-87
Os04g0456700 Similar to TMV induced protein 1-2 212 1e-55
Os06g0221300 Similar to Dehydration stress-induced protein 211 2e-55
Os04g0456300 191 2e-49
Os04g0456200 Similar to TMV induced protein 1-2 179 1e-45
Os10g0361000 Lipoxygenase, LH2 domain containing protein 111 4e-25
Os10g0361350 Lipoxygenase, LH2 domain containing protein 108 2e-24
Os10g0361900 Lipoxygenase, LH2 domain containing protein 108 3e-24
Os03g0594500 72 2e-13
Os02g0547300 Conserved hypothetical protein 72 3e-13
Os11g0461600 67 1e-11
>Os02g0753300 Lipoxygenase, LH2 domain containing protein
Length = 193
Score = 316 bits (810), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 153/166 (92%), Positives = 153/166 (92%)
Query: 19 TVPAHGRRDLLPTRIKLVRXXXXXXXXXXXXXKMECVYTVYIRTGSIWKAGTDANITLEL 78
TVPAHGRRDLLPTRIKLVR KMECVYTVYIRTGSIWKAGTDANITLEL
Sbjct: 19 TVPAHGRRDLLPTRIKLVRGADAGAGAVAGGDKMECVYTVYIRTGSIWKAGTDANITLEL 78
Query: 79 AGADGNGVGITDLPSWGGLMGEGHSYFERGNLDIFSGRGPCMAAPPCWMRVASDGTGPHH 138
AGADGNGVGITDLPSWGGLMGEGHSYFERGNLDIFSGRGPCMAAPPCWMRVASDGTGPHH
Sbjct: 79 AGADGNGVGITDLPSWGGLMGEGHSYFERGNLDIFSGRGPCMAAPPCWMRVASDGTGPHH 138
Query: 139 GWYCNYVEVTVTGAHKGCAQQLFTVEQWLATDAAPYKLEAIRDKCS 184
GWYCNYVEVTVTGAHKGCAQQLFTVEQWLATDAAPYKLEAIRDKCS
Sbjct: 139 GWYCNYVEVTVTGAHKGCAQQLFTVEQWLATDAAPYKLEAIRDKCS 184
>Os04g0456700 Similar to TMV induced protein 1-2
Length = 193
Score = 212 bits (539), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 95/132 (71%), Positives = 110/132 (83%)
Query: 53 ECVYTVYIRTGSIWKAGTDANITLELAGADGNGVGITDLPSWGGLMGEGHSYFERGNLDI 112
+CVYT+Y+RTG+IWK GTD+ I + L GADG+GV I DL WGGLMG+GH Y+ERGNLDI
Sbjct: 44 KCVYTIYVRTGTIWKGGTDSVIGVTLLGADGSGVRIRDLERWGGLMGDGHDYYERGNLDI 103
Query: 113 FSGRGPCMAAPPCWMRVASDGTGPHHGWYCNYVEVTVTGAHKGCAQQLFTVEQWLATDAA 172
FSGRGPCM PC M + SDGTGPHHGWYCNY+E TVTG H GCAQQLFTVEQWLATDA+
Sbjct: 104 FSGRGPCMRQAPCRMNLTSDGTGPHHGWYCNYLEATVTGPHLGCAQQLFTVEQWLATDAS 163
Query: 173 PYKLEAIRDKCS 184
PY+L A+ D C+
Sbjct: 164 PYRLYAVVDNCN 175
>Os06g0221300 Similar to Dehydration stress-induced protein
Length = 171
Score = 211 bits (538), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 93/133 (69%), Positives = 108/133 (81%)
Query: 51 KMECVYTVYIRTGSIWKAGTDANITLELAGADGNGVGITDLPSWGGLMGEGHSYFERGNL 110
+ CVYTV++RTGS WK GTD+ I +E AGADG GV I DL WGGLMG GH Y+ERGNL
Sbjct: 33 EYNCVYTVFVRTGSAWKGGTDSTIGVEFAGADGRGVRIADLERWGGLMGAGHDYYERGNL 92
Query: 111 DIFSGRGPCMAAPPCWMRVASDGTGPHHGWYCNYVEVTVTGAHKGCAQQLFTVEQWLATD 170
D+FSGRGPC+ A PCWM + SDG G HHGWYCNYVEVT TG H+GCAQ+ F VEQWLATD
Sbjct: 93 DVFSGRGPCLPAAPCWMNLTSDGAGAHHGWYCNYVEVTATGPHRGCAQRRFDVEQWLATD 152
Query: 171 AAPYKLEAIRDKC 183
A+PY+L A+RD+C
Sbjct: 153 ASPYRLTAVRDQC 165
>Os04g0456300
Length = 190
Score = 191 bits (486), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 87/134 (64%), Positives = 101/134 (75%)
Query: 51 KMECVYTVYIRTGSIWKAGTDANITLELAGADGNGVGITDLPSWGGLMGEGHSYFERGNL 110
K ECVYT+Y+ TG IWKAGTDA I +ELA ADG+G + DL WGGLMG GH Y+ERGN+
Sbjct: 47 KNECVYTLYVETGWIWKAGTDAAIGVELAAADGSGFAVGDLERWGGLMGAGHDYYERGNV 106
Query: 111 DIFSGRGPCMAAPPCWMRVASDGTGPHHGWYCNYVEVTVTGAHKGCAQQLFTVEQWLATD 170
D+FSGR PC+ +PPC M + SDG G HHGWYC VEVT TG H GCA+ F VEQWLATD
Sbjct: 107 DVFSGRAPCLPSPPCRMNLTSDGAGAHHGWYCKSVEVTATGPHAGCAKAAFDVEQWLATD 166
Query: 171 AAPYKLEAIRDKCS 184
A PY+L A R C+
Sbjct: 167 APPYQLYAERSVCA 180
>Os04g0456200 Similar to TMV induced protein 1-2
Length = 184
Score = 179 bits (454), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 81/131 (61%), Positives = 97/131 (74%)
Query: 53 ECVYTVYIRTGSIWKAGTDANITLELAGADGNGVGITDLPSWGGLMGEGHSYFERGNLDI 112
+CVYT+Y+ TGSIWKAGTDA I +EL A GNG+ I +L +WGGLM GH YFER N+DI
Sbjct: 40 QCVYTLYVETGSIWKAGTDAAIGVELYTAAGNGILIRNLQAWGGLMAAGHDYFERSNVDI 99
Query: 113 FSGRGPCMAAPPCWMRVASDGTGPHHGWYCNYVEVTVTGAHKGCAQQLFTVEQWLATDAA 172
FSGRGPC+ AP C M++ S+G G HHGW+C VEVTV G H C + F V+QWLATDA
Sbjct: 100 FSGRGPCLGAPVCRMKLVSNGAGEHHGWFCKSVEVTVAGPHARCNRAAFDVQQWLATDAP 159
Query: 173 PYKLEAIRDKC 183
PY+L A R C
Sbjct: 160 PYQLYAERSVC 170
>Os10g0361000 Lipoxygenase, LH2 domain containing protein
Length = 164
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 80/134 (59%), Gaps = 6/134 (4%)
Query: 53 ECVYTVYIRTGSIWKAGTDANITLELAGADGNGVGITDLPSWGGLMGEGHSYFERGNLDI 112
+C + + ++T AGTDA ++L++ A G + IT+L SWG M GH YFE+GNLD
Sbjct: 27 QCTFEILVKTDGRRNAGTDARVSLQVRAASGPTLTITNLESWGQ-MAAGHDYFEKGNLDR 85
Query: 113 FSGRGPCMAAPPCWMRVASDGTGPHHGWYCNYVEVTVTGAHKGCAQQL---FTVEQWLAT 169
F G G CM + PC M + SDG+G GWY +YV VT G +G + + V+QWLA
Sbjct: 86 FRGAGACMPSEPCNMVLTSDGSGNKPGWYVSYVMVTQLG--QGSLPSMTHRWAVDQWLAI 143
Query: 170 DAAPYKLEAIRDKC 183
D AP+ L A R C
Sbjct: 144 DEAPHMLTAERRGC 157
>Os10g0361350 Lipoxygenase, LH2 domain containing protein
Length = 163
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
Query: 53 ECVYTVYIRTGSIWKAGTDANITLELAGADGNGVGITDLPSWGGLMGEGHSYFERGNLDI 112
+C + + ++T W AGT+A ++L++ A G + IT+L SWG M H YFE+GNLD
Sbjct: 26 QCTFEILVKTDGRWYAGTNARVSLQVRAASGPTLTITNLESWGQ-MAASHDYFEKGNLDR 84
Query: 113 FSGRGPCMAAPPCWMRVASDGTGPHHGWYCNYVEVTVTGAHK-GCAQQLFTVEQWLATDA 171
F G G CM + PC M + SDG+G GWY +YV VT G + V+QWLA D
Sbjct: 85 FRGTGDCMPSEPCNMVLTSDGSGNMPGWYVSYVMVTQLGQGSLPSMTHRWAVDQWLAIDE 144
Query: 172 APYKLEAIRDKC 183
P+ L A R C
Sbjct: 145 PPHMLTAERKGC 156
>Os10g0361900 Lipoxygenase, LH2 domain containing protein
Length = 163
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
Query: 53 ECVYTVYIRTGSIWKAGTDANITLELAGADGNGVGITDLPSWGGLMGEGHSYFERGNLDI 112
C + + ++T AGTDA ++L++ A G + + +L SWG M GH YFE+GNLD
Sbjct: 26 RCTFEIVVKTDGRRNAGTDARVSLQVRAARGPTLTVANLESWGQ-MAAGHDYFEKGNLDR 84
Query: 113 FSGRGPCMAAPPCWMRVASDGTGPHHGWYCNYVEVTVTGAHK-GCAQQLFTVEQWLATDA 171
F G G CM + PC M + SDG+G GWY +YV VT G + + V+QWLA D
Sbjct: 85 FRGAGDCMPSEPCNMVLTSDGSGNKPGWYVSYVMVTQLGQGRLPSMTHRWAVDQWLAIDE 144
Query: 172 APYKLEAIRDKC 183
AP+ L A R C
Sbjct: 145 APHMLTAERRGC 156
>Os03g0594500
Length = 286
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
Query: 51 KMECVYTVY-IRTGSIWKAGTDANITLELAGADGNGVGITDLPSWGGLMGEGHSYFER 107
K +CVY +Y + TG IWKAGTDA I++EL ADG+G + DL WGGLMG H Y+ER
Sbjct: 171 KNKCVYMLYYMGTGWIWKAGTDAAISVELTAADGSGFAVRDLERWGGLMGAEHDYYER 228
>Os02g0547300 Conserved hypothetical protein
Length = 187
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 52/91 (57%), Gaps = 7/91 (7%)
Query: 51 KMECVYTVYIRTGSIWKAGTDANITLELAGADGNGVGITDLPSWGGLMGEGHSYFERGNL 110
K E VYT+Y+ TG WKAGTDA + +E A ADG+G + DL WGGLMG GH Y+ R
Sbjct: 81 KNERVYTLYLETG--WKAGTDAAVDVEPAAADGSGFAVGDLEWWGGLMGAGHDYYVRAAA 138
Query: 111 -DIFSGRGPCMAAPPC----WMRVASDGTGP 136
R P AA PC + RV++ P
Sbjct: 139 PPSLRHRTPTDAASPCRAFIFSRVSAAAASP 169
>Os11g0461600
Length = 106
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 47/89 (52%), Gaps = 13/89 (14%)
Query: 19 TVPAHGRRDL-----LPTRIKLVRXXXXXXXXXXXXXKMECVYTVYIRTGSIWKAGTDAN 73
V A G R L LP R +LV K ECVYT+Y+ TG IW AGTDA
Sbjct: 25 VVLAAGSRSLDGMAALPRRGQLV--------AGGDNDKNECVYTLYVETGWIWMAGTDAA 76
Query: 74 ITLELAGADGNGVGITDLPSWGGLMGEGH 102
I +ELA D +G + DL WG LMG GH
Sbjct: 77 IGVELAAVDSSGFAVGDLERWGRLMGAGH 105
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,213,138
Number of extensions: 268697
Number of successful extensions: 514
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 507
Number of HSP's successfully gapped: 11
Length of query: 193
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 98
Effective length of database: 12,075,471
Effective search space: 1183396158
Effective search space used: 1183396158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)