BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0750600 Os02g0750600|AK066145
         (119 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0750600  Ubiquitin domain containing protein                 245   6e-66
Os03g0426800  Ubiquitin domain containing protein                 145   6e-36
Os06g0224100  Conserved hypothetical protein                      143   2e-35
Os12g0141900  Conserved hypothetical protein                      133   4e-32
Os04g0393300  Conserved hypothetical protein                      125   9e-30

>Os02g0750600 Ubiquitin domain containing protein
          Length = 119

 Score =  245 bits (625), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 119/119 (100%), Positives = 119/119 (100%)

Query: 1   MAGGKEPIEVKFRLFDGTDIGPSKYDPSTTVSALKEFILARWPQDKEITPKTVNDLKLIN 60
           MAGGKEPIEVKFRLFDGTDIGPSKYDPSTTVSALKEFILARWPQDKEITPKTVNDLKLIN
Sbjct: 1   MAGGKEPIEVKFRLFDGTDIGPSKYDPSTTVSALKEFILARWPQDKEITPKTVNDLKLIN 60

Query: 61  AGRILENNRTLAESRVPVGEVPGGVITMHVVVRPPQPDKNSEKQLANSPKQNRCGCTIL 119
           AGRILENNRTLAESRVPVGEVPGGVITMHVVVRPPQPDKNSEKQLANSPKQNRCGCTIL
Sbjct: 61  AGRILENNRTLAESRVPVGEVPGGVITMHVVVRPPQPDKNSEKQLANSPKQNRCGCTIL 119



>Os03g0426800 Ubiquitin domain containing protein
          Length = 119

 Score =  145 bits (366), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 71/120 (59%), Positives = 92/120 (76%), Gaps = 2/120 (1%)

Query: 1   MAGG-KEPIEVKFRLFDGTDIGPSKYDPSTTVSALKEFILARWPQDKEITPKTVNDLKLI 59
           M+GG +E  E+KFRL DGTDIGP +Y  ++TV+ LKE I+A+WP+DKE  P+TVNDLKLI
Sbjct: 1   MSGGVQEQFEIKFRLPDGTDIGPKRYPAASTVATLKESIVAQWPKDKEKGPRTVNDLKLI 60

Query: 60  NAGRILENNRTLAESRVPVGEVPGGVITMHVVVRPPQPDKNSEKQLANSPKQNRCGCTIL 119
           NAG+ILENN+TL+E + P+ +   G+ TMHVVVR P  DK S K +A  PK  RCGC+I+
Sbjct: 61  NAGKILENNKTLSECKSPICDF-SGLTTMHVVVRAPTSDKQSNKIVAKKPKDFRCGCSIM 119



>Os06g0224100 Conserved hypothetical protein
          Length = 126

 Score =  143 bits (361), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 71/115 (61%), Positives = 90/115 (78%), Gaps = 1/115 (0%)

Query: 6   EPIEVKFRLFDGTDIGPSKYDPSTTVSALKEFILARWPQDKEITPKTVNDLKLINAGRIL 65
           E +EV+FRL DG+DIGPS +D +TTV+ALKEF+LARWPQ KEI P+TVND+ +INAG++L
Sbjct: 12  EAVEVRFRLDDGSDIGPSMHDQATTVTALKEFVLARWPQGKEIAPRTVNDVTIINAGQVL 71

Query: 66  ENNRTLAESRVPVGEVPGGVITMHVVVRPPQPDKNSEK-QLANSPKQNRCGCTIL 119
           ENNRTLAESR    E P G ITMHVVVR  +P++  ++   A  P++  CGCTIL
Sbjct: 72  ENNRTLAESRNLAAESPEGPITMHVVVRRSRPERRVKQPPKARPPERIGCGCTIL 126



>Os12g0141900 Conserved hypothetical protein
          Length = 101

 Score =  133 bits (334), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 69/80 (86%), Positives = 71/80 (88%), Gaps = 1/80 (1%)

Query: 28  STTVSALKEFILARWPQDKEITPKTVNDLKLINAGRILENNRTLAESRVPVGEVPGGVIT 87
           STTVSALKEFILARWPQDKEITPKTVNDLKLINAGRILENNRTL ESRV V EVPGGVIT
Sbjct: 16  STTVSALKEFILARWPQDKEITPKTVNDLKLINAGRILENNRTLVESRVRV-EVPGGVIT 74

Query: 88  MHVVVRPPQPDKNSEKQLAN 107
           MHVVV PPQ DKN  ++  N
Sbjct: 75  MHVVVHPPQSDKNKRRRNKN 94



>Os04g0393300 Conserved hypothetical protein
          Length = 135

 Score =  125 bits (313), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 58/110 (52%), Positives = 79/110 (71%), Gaps = 1/110 (0%)

Query: 11  KFRLFDGTDIGPSKYDP-STTVSALKEFILARWPQDKEITPKTVNDLKLINAGRILENNR 69
           KFRLFDG+DIGP + +  +TTV+ALK+ ++A WP+DK I PKT ND+KLI+ G+ILEN++
Sbjct: 26  KFRLFDGSDIGPLRCNAVATTVAALKDRVVADWPKDKTIVPKTANDVKLISGGKILENDK 85

Query: 70  TLAESRVPVGEVPGGVITMHVVVRPPQPDKNSEKQLANSPKQNRCGCTIL 119
            +A+ R P G++P   ITMHVVV+P       +K+    PK  RC CTIL
Sbjct: 86  NIAQCRAPFGDLPSTAITMHVVVQPSSAKSKPDKKTNKLPKTTRCSCTIL 135



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,618,338
Number of extensions: 172009
Number of successful extensions: 304
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 300
Number of HSP's successfully gapped: 5
Length of query: 119
Length of database: 17,035,801
Length adjustment: 85
Effective length of query: 34
Effective length of database: 12,597,611
Effective search space: 428318774
Effective search space used: 428318774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 149 (62.0 bits)