BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0744600 Os02g0744600|AF435648
         (111 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0744600  Hypothetical protein                                226   4e-60
Os02g0192500  Similar to Cellulose synthase-like protein (Fr...    94   3e-20
Os10g0406400  Conserved hypothetical protein                       77   4e-15
Os03g0169500  Similar to Cellulose synthase-like A4                74   3e-14
Os06g0230100  Glycosyl transferase, family 2 domain containi...    67   3e-12

>Os02g0744600 Hypothetical protein
          Length = 111

 Score =  226 bits (575), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 111/111 (100%), Positives = 111/111 (100%)

Query: 1   IILWFLFENVMALHRLKATLIGFFEAGRANEWIVTQKLGNIQKLKSIVRVTKNCRFKDRF 60
           IILWFLFENVMALHRLKATLIGFFEAGRANEWIVTQKLGNIQKLKSIVRVTKNCRFKDRF
Sbjct: 1   IILWFLFENVMALHRLKATLIGFFEAGRANEWIVTQKLGNIQKLKSIVRVTKNCRFKDRF 60

Query: 61  HCLELFIGGFLLTSACYDYLYRDDIFYIFLLSQSIIYFAIGFEFMGVSVSS 111
           HCLELFIGGFLLTSACYDYLYRDDIFYIFLLSQSIIYFAIGFEFMGVSVSS
Sbjct: 61  HCLELFIGGFLLTSACYDYLYRDDIFYIFLLSQSIIYFAIGFEFMGVSVSS 111



>Os02g0192500 Similar to Cellulose synthase-like protein (Fragment)
          Length = 521

 Score = 93.6 bits (231), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 51/112 (45%), Positives = 68/112 (60%), Gaps = 3/112 (2%)

Query: 1   IILWFLFENVMALHRLKATLIGFFEAGRANEWIVTQKLGNIQKLKSIVRVTKNCRFK--- 57
           +  W LFENVM+LHR KATLIG  EAGRANEW+VT+KLGN  K+KS  + +    F    
Sbjct: 407 LFFWILFENVMSLHRTKATLIGLLEAGRANEWVVTEKLGNALKMKSSSKSSAKKSFMRVW 466

Query: 58  DRFHCLELFIGGFLLTSACYDYLYRDDIFYIFLLSQSIIYFAIGFEFMGVSV 109
           DR +  EL +  FL +   YD  +  D F+I+L  Q   +F +G  ++G  V
Sbjct: 467 DRLNVTELGVAAFLFSCGWYDLAFGKDHFFIYLFFQGAAFFIVGIGYVGTIV 518



>Os10g0406400 Conserved hypothetical protein
          Length = 264

 Score = 76.6 bits (187), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 65/110 (59%), Gaps = 3/110 (2%)

Query: 4   WFLFENVMALHRLKATLIGFFEAGRANEWIVTQKLGNIQKLK---SIVRVTKNCRFKDRF 60
           W LFENVMA+HR++A L G  E  RAN+W+VT+K+G+  K +    ++   K     +R 
Sbjct: 153 WILFENVMAMHRMRAALSGLLETARANDWVVTEKVGDQVKDELDVPLLEPLKPTECAERI 212

Query: 61  HCLELFIGGFLLTSACYDYLYRDDIFYIFLLSQSIIYFAIGFEFMGVSVS 110
           +  EL +  +LL  A YD++  +  +YI++  Q++ +  +GF F+G    
Sbjct: 213 YIPELLLALYLLICASYDFVLGNHKYYIYIYLQAVAFTVMGFGFVGTRTP 262



>Os03g0169500 Similar to Cellulose synthase-like A4
          Length = 624

 Score = 73.9 bits (180), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/103 (35%), Positives = 59/103 (57%), Gaps = 3/103 (2%)

Query: 3   LWFLFENVMALHRLKATLIGFFEAGRANEWIVTQKLGNIQKLKSIVRVTKNCRFKD---R 59
            W LFENVMA+HR++A L G  E    N+W+VT+K+G+  K K  V + +  +  D   R
Sbjct: 482 FWILFENVMAMHRMRAALTGLLETMNVNQWVVTEKVGDHVKDKLEVPLLEPLKPTDCVER 541

Query: 60  FHCLELFIGGFLLTSACYDYLYRDDIFYIFLLSQSIIYFAIGF 102
            +  EL +  +LL  A YD +     +Y+++  Q+  + A+GF
Sbjct: 542 IYIPELMVAFYLLVCASYDLVLGAKHYYLYIYLQAFAFIALGF 584



>Os06g0230100 Glycosyl transferase, family 2 domain containing protein
          Length = 506

 Score = 67.0 bits (162), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 37/62 (59%), Gaps = 2/62 (3%)

Query: 1   IILWFLFENVMALHRLKATLIGFFEAGRANEWIVTQKLGNIQKLKSIVRVTKN--CRFKD 58
           I  W LFENVM+ HR KA  IG  E G  NEW+VT+KLGN    K   ++ +   CRF D
Sbjct: 404 IPFWILFENVMSFHRTKAMFIGLLELGGVNEWVVTEKLGNGSNTKPASQILERPPCRFWD 463

Query: 59  RF 60
           R 
Sbjct: 464 RL 465



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.335    0.148    0.464 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,131,933
Number of extensions: 98461
Number of successful extensions: 316
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 314
Number of HSP's successfully gapped: 6
Length of query: 111
Length of database: 17,035,801
Length adjustment: 78
Effective length of query: 33
Effective length of database: 12,963,109
Effective search space: 427782597
Effective search space used: 427782597
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 149 (62.0 bits)