Os02g0744600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os02g0744600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 432.36 | 0.977 | 8.11 | -5.9 | 1.84 | -1.8 | 0.278 | -0.812 | -1.96 | 6.09 | 19.9 | 394 | -- | -- |
| 434.26 | 0.971 | 8.13 | -5.97 | 1.85 | -1.67 | 0.255 | -- | -1.97 | 6.04 | 19.9 | 390 | -- | -- |
| 432.51 | 0.969 | 8.12 | -5.9 | 1.84 | -1.8 | -- | -0.746 | -1.97 | 6.13 | 19.87 | 405 | -- | -- |
| 433.99 | 0.97 | 8.13 | -6 | 1.83 | -1.68 | -- | -- | -1.98 | 6.11 | 19.87 | 394 | -- | -- |
| 592.49 | 1.13 | 8.14 | -5.88 | -- | -1.73 | -- | -0.6 | -1.94 | -- | 19.8 | 1425 | -- | -- |
| 507.34 | 1.06 | 8.07 | -5.43 | 1.63 | -- | -0.179 | -- | -1.69 | 6.17 | -- | -- | -- | -- |
| 507.41 | 1.05 | 8.07 | -5.43 | 1.63 | -- | -- | -- | -1.69 | 6.14 | -- | -- | -- | -- |
| 590.76 | 1.13 | 8.18 | -6.05 | -- | -1.63 | -- | -- | -2 | -- | 20.29 | 1417 | -- | -- |
| 1265.54 | 1.67 | 7.93 | -- | 1.55 | 2 | -- | -- | -1.05 | 6.29 | 16.8 | 4 | -- | -- |
| 644.88 | 1.19 | 8.1 | -5.39 | -- | -- | -- | -- | -1.65 | -- | -- | -- | -- | -- |
| 1285.33 | 1.68 | 7.93 | -- | 1.55 | -- | -- | -- | -1.08 | 6.32 | -- | -- | -- | -- |
| 1382.21 | 1.73 | 7.98 | -- | -- | 1.54 | -- | -- | -1.11 | -- | 32.48 | 3 | -- | -- |
| 1410.4 | 1.75 | 7.96 | -- | -- | -- | -- | -- | -1.05 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 425.82 | temperature | 20 | 270 | > th | dose independent | rect. | 16 | 15 |
| 3 | 427.67 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 12 |
| 8 | 428.97 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 22 |
| 15 | 429.90 | temperature | 20 | 720 | > th | dose independent | sin | 13 | NA |
| 19 | 430.31 | temperature | 20 | 720 | > th | dose independent | rect. | 11 | 18 |
| 24 | 430.96 | temperature | 20 | 270 | > th | dose independent | rect. | 10 | 23 |
| 43 | 432.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 55 | 433.78 | temperature | 20 | 270 | > th | dose independent | sin | 8 | NA |
| 58 | 433.86 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 17 |
| 60 | 434.02 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 8 |
| 61 | 434.07 | temperature | 20 | 270 | > th | dose independent | rect. | 24 | 9 |
| 73 | 434.81 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 14 |
| 94 | 435.66 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 17 |
| 107 | 436.15 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 23 |
| 127 | 436.99 | temperature | 10 | 720 | > th | dose dependent | sin | 12 | NA |
| 144 | 437.53 | temperature | 20 | 270 | < th | dose independent | rect. | 15 | 19 |
| 167 | 438.03 | temperature | 20 | 720 | < th | dose independent | sin | 14 | NA |
| 203 | 438.72 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 23 |
| 210 | 438.86 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 23 |
| 212 | 438.91 | temperature | 20 | 270 | < th | dose independent | rect. | 18 | 23 |
| 215 | 438.96 | temperature | 20 | 720 | < th | dose independent | rect. | 17 | 13 |
| 218 | 439.01 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 227 | 439.08 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 23 |
| 230 | 439.14 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 23 |
| 269 | 439.57 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 21 |
| 279 | 439.76 | temperature | 20 | 720 | < th | dose independent | rect. | 9 | 21 |
| 281 | 439.79 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 303 | 440.11 | temperature | 20 | 720 | < th | dose independent | rect. | 11 | 19 |
| 408 | 441.46 | temperature | 20 | 270 | < th | dose independent | sin | 9 | NA |
| 589 | 443.62 | temperature | 20 | 720 | > th | dose independent | sin | 21 | NA |
| 611 | 443.97 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 15 |
| 723 | 445.80 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 6 |
| 750 | 446.30 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 13 |
| 764 | 446.48 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 10 |
| 791 | 446.73 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 797 | 446.81 | temperature | 30 | 720 | < th | dose dependent | sin | 12 | NA |
| 801 | 446.85 | temperature | 15 | 270 | > th | dose dependent | rect. | 24 | 9 |
| 817 | 446.97 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 838 | 447.20 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 839 | 447.21 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 872 | 447.62 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 4 | 12 |
| 883 | 447.76 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 5 | 11 |
| 888 | 447.88 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 16 |
| 892 | 447.97 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 905 | 448.07 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 928 | 448.28 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 956 | 448.52 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 959 | 448.56 | atmosphere | 995 | 43200 | > th | dose independent | sin | 1 | NA |
| 969 | 448.64 | atmosphere | 995 | 43200 | < th | dose independent | sin | 1 | NA |
| 971 | 448.71 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 977 | 448.82 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 16 |
| 995 | 448.96 | wind | 9 | 43200 | > th | dose dependent | sin | 12 | NA |