BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0744600 Os02g0744600|AF435648
(111 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G03760.1 | chr5:985910-990087 REVERSE LENGTH=534 109 3e-25
AT5G22740.1 | chr5:7555379-7559866 REVERSE LENGTH=535 103 2e-23
AT1G23480.1 | chr1:8333917-8336230 FORWARD LENGTH=557 100 2e-22
AT4G13410.1 | chr4:7792219-7795824 REVERSE LENGTH=538 95 9e-21
AT2G35650.1 | chr2:14985625-14988187 FORWARD LENGTH=557 93 3e-20
AT3G56000.1 | chr3:20783462-20785684 REVERSE LENGTH=536 92 8e-20
AT4G16590.1 | chr4:9345757-9349039 FORWARD LENGTH=402 90 2e-19
AT1G24070.1 | chr1:8516437-8519734 REVERSE LENGTH=553 90 3e-19
AT5G16190.1 | chr5:5283663-5286293 REVERSE LENGTH=444 90 3e-19
>AT5G03760.1 | chr5:985910-990087 REVERSE LENGTH=534
Length = 533
Score = 109 bits (273), Expect = 3e-25, Method: Composition-based stats.
Identities = 54/112 (48%), Positives = 73/112 (65%), Gaps = 4/112 (3%)
Query: 1 IILWFLFENVMALHRLKATLIGFFEAGRANEWIVTQKLGNIQKLKSIVRVTKNC---RFK 57
++ W LFENVM+LHR KAT IG E GR NEWIVT+KLG++ K KS + +K RF
Sbjct: 420 MVFWILFENVMSLHRTKATFIGLLEGGRVNEWIVTEKLGDV-KAKSATKTSKKVIRFRFG 478
Query: 58 DRFHCLELFIGGFLLTSACYDYLYRDDIFYIFLLSQSIIYFAIGFEFMGVSV 109
DR H LEL +G +LL CYD + + +Y++L +Q+I +F GF +G V
Sbjct: 479 DRIHVLELGVGMYLLFVGCYDAFFGKNHYYLYLFAQAIAFFIAGFGQIGTIV 530
>AT5G22740.1 | chr5:7555379-7559866 REVERSE LENGTH=535
Length = 534
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 70/112 (62%), Gaps = 4/112 (3%)
Query: 4 WFLFENVMALHRLKATLIGFFEAGRANEWIVTQKLGNIQ----KLKSIVRVTKNCRFKDR 59
W LFENVM+LHR KATLIG FEAGRANEW+VT KLG+ Q K I R + + DR
Sbjct: 423 WILFENVMSLHRTKATLIGLFEAGRANEWVVTAKLGSGQSAKGNTKGIKRFPRIFKLPDR 482
Query: 60 FHCLELFIGGFLLTSACYDYLYRDDIFYIFLLSQSIIYFAIGFEFMGVSVSS 111
+ LEL FL CYD+++ + ++I+L Q++ +F G ++G V S
Sbjct: 483 LNTLELGFAAFLFVCGCYDFVHGKNNYFIYLFLQTMSFFISGLGWIGTYVPS 534
>AT1G23480.1 | chr1:8333917-8336230 FORWARD LENGTH=557
Length = 556
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%)
Query: 1 IILWFLFENVMALHRLKATLIGFFEAGRANEWIVTQKLGNIQKLKSIVRVTKN--CRFKD 58
++ W LFENVM++HR KAT IG EAGR NEW+VT+KLG+ K K I + T RF
Sbjct: 443 LVFWILFENVMSMHRTKATFIGLLEAGRVNEWVVTEKLGDTLKSKLIGKATTKLYTRFGQ 502
Query: 59 RFHCLELFIGGFLLTSACYDYLYRDDIFYIFLLSQSIIYFAIGFEFMGVSVSS 111
R + EL +G ++ CYD+ Y FY++L QS +F G ++G V +
Sbjct: 503 RLNWRELVVGLYIFFCGCYDFAYGGSYFYVYLFLQSCAFFVAGVGYIGTFVPT 555
>AT4G13410.1 | chr4:7792219-7795824 REVERSE LENGTH=538
Length = 537
Score = 94.7 bits (234), Expect = 9e-21, Method: Composition-based stats.
Identities = 45/106 (42%), Positives = 65/106 (61%), Gaps = 3/106 (2%)
Query: 1 IILWFLFENVMALHRLKATLIGFFEAGRANEWIVTQKLGNIQKLKSIVRVTKNCRFKDRF 60
+I W LFENVMA+HR K TLIG FE GR NEW+VT+KLG+ K + +N R R
Sbjct: 434 VIFWVLFENVMAMHRTKGTLIGLFEGGRVNEWVVTEKLGDTLNTKLL---PQNGRLPKRV 490
Query: 61 HCLELFIGGFLLTSACYDYLYRDDIFYIFLLSQSIIYFAIGFEFMG 106
+ E+ +G ++L ACYD+ + + Y++L Q+ + G F+G
Sbjct: 491 NLKEMMMGIYILCCACYDFAFGNAFLYLYLFMQATAFLISGVGFVG 536
>AT2G35650.1 | chr2:14985625-14988187 FORWARD LENGTH=557
Length = 556
Score = 92.8 bits (229), Expect = 3e-20, Method: Composition-based stats.
Identities = 45/95 (47%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 1 IILWFLFENVMALHRLKATLIGFFEAGRANEWIVTQKLGNIQKLKSIVRVTKNCRFKDRF 60
+ W LFEN M+L R KA ++G FE GR EW+VT+KLG+ K K I +V N RF++R
Sbjct: 442 LAFWVLFENAMSLLRAKALVMGLFETGRVQEWVVTEKLGDTLKTKLIPQV-PNVRFRERV 500
Query: 61 HCLELFIGGFLLTSACYDYLYRDDIFYIFLLSQSI 95
H LEL +G +LL YD +Y + Y++LL QS+
Sbjct: 501 HLLELLVGAYLLFCGIYDIVYGKNTLYVYLLFQSV 535
>AT3G56000.1 | chr3:20783462-20785684 REVERSE LENGTH=536
Length = 535
Score = 91.7 bits (226), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 63/111 (56%)
Query: 1 IILWFLFENVMALHRLKATLIGFFEAGRANEWIVTQKLGNIQKLKSIVRVTKNCRFKDRF 60
I+ W LFENVMA+HR TLIG E R EWIVTQKLG L+ + + F +R
Sbjct: 418 ILYWILFENVMAMHRSIGTLIGLLETSRVKEWIVTQKLGESNNLRENLIFPDHYSFPERL 477
Query: 61 HCLELFIGGFLLTSACYDYLYRDDIFYIFLLSQSIIYFAIGFEFMGVSVSS 111
E+ +G +L YD+++ Y++L QSI +F +G ++G+ V S
Sbjct: 478 RWREIMVGMYLFICGYYDFVFGRTYLYVYLFLQSIAFFVVGVGYVGMPVPS 528
>AT4G16590.1 | chr4:9345757-9349039 FORWARD LENGTH=402
Length = 401
Score = 89.7 bits (221), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 62/107 (57%)
Query: 1 IILWFLFENVMALHRLKATLIGFFEAGRANEWIVTQKLGNIQKLKSIVRVTKNCRFKDRF 60
+I W LFENVMA+HR K T IG E GR NEW+VT+KLG+ K K + RV + R
Sbjct: 295 VIFWVLFENVMAMHRTKGTCIGLLEGGRVNEWVVTEKLGDALKSKLLSRVVQRKSCYQRV 354
Query: 61 HCLELFIGGFLLTSACYDYLYRDDIFYIFLLSQSIIYFAIGFEFMGV 107
+ E+ +G ++L A Y +Y + +L Q+ +F GF F+G
Sbjct: 355 NSKEVMVGVYILGCALYGLIYGHTWLHFYLFLQATAFFVSGFGFVGT 401
>AT1G24070.1 | chr1:8516437-8519734 REVERSE LENGTH=553
Length = 552
Score = 89.7 bits (221), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 1 IILWFLFENVMALHRLKATLIGFFEAGRANEWIVTQKLGNIQKLKSIVRVTKNCR-FKDR 59
+I W LFENVM++HR K T IG E R NEW+VT+KLG+ K K + R+ K F +R
Sbjct: 445 VIFWILFENVMSMHRTKGTFIGILERQRVNEWVVTEKLGDALKTKLLPRIGKPSNMFLER 504
Query: 60 FHCLELFIGGFLLTSACYDYLYRDDIFYIFLLSQSIIYFAIGFEFMGV 107
+ E+ +G ++L ACY + + + Y++L Q++ + G F+G
Sbjct: 505 VNSKEIMVGIYILCCACYGLFFGNTLLYLYLFMQAVAFLISGVGFVGT 552
>AT5G16190.1 | chr5:5283663-5286293 REVERSE LENGTH=444
Length = 443
Score = 89.7 bits (221), Expect = 3e-19, Method: Composition-based stats.
Identities = 43/107 (40%), Positives = 66/107 (61%), Gaps = 1/107 (0%)
Query: 1 IILWFLFENVMALHRLKATLIGFFEAGRANEWIVTQKLGNIQKLKSIVRVTK-NCRFKDR 59
+I W LFENVMA+HR K T IG E GR NEW+VT+KLG+ + K + +V K F +R
Sbjct: 336 VIFWVLFENVMAMHRTKGTFIGLLEGGRVNEWVVTEKLGDALETKLLPQVRKPRNGFLER 395
Query: 60 FHCLELFIGGFLLTSACYDYLYRDDIFYIFLLSQSIIYFAIGFEFMG 106
+ E+ +G ++L A Y+ ++ + YI+L Q++ + G F+G
Sbjct: 396 INSKEMMVGIYILCCASYNLVFGKTVLYIYLYMQALAFIIAGIGFIG 442
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.335 0.148 0.464
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,218,302
Number of extensions: 76341
Number of successful extensions: 281
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 274
Number of HSP's successfully gapped: 9
Length of query: 111
Length of database: 11,106,569
Length adjustment: 80
Effective length of query: 31
Effective length of database: 8,913,289
Effective search space: 276311959
Effective search space used: 276311959
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 104 (44.7 bits)