BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0741700 Os02g0741700|AK069210
(166 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0741700 Conserved hypothetical protein 235 9e-63
Os06g0236300 Conserved hypothetical protein 139 1e-33
Os09g0381600 Conserved hypothetical protein 126 9e-30
Os08g0420700 Conserved hypothetical protein 125 2e-29
Os03g0200200 Conserved hypothetical protein 83 1e-16
Os02g0607400 70 1e-12
>Os02g0741700 Conserved hypothetical protein
Length = 166
Score = 235 bits (600), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 123/166 (74%), Positives = 123/166 (74%)
Query: 1 MGNCQAAEAAAVVIQHPGGRVERLCWSTSAAEVMRANPGHYIALVTLRVAEERQDGDGGA 60
MGNCQAAEAAAVVIQHPGGRVERLCWSTSAAEVMRANPGHYIALVTLRVAEERQDGDGGA
Sbjct: 1 MGNCQAAEAAAVVIQHPGGRVERLCWSTSAAEVMRANPGHYIALVTLRVAEERQDGDGGA 60
Query: 61 XXXXXXXXXXXXXPKETLLLGHAYRLITTHEVTKAVQARKEEKVRKAQQQLEESRQKLQS 120
PKETLLLGHAYRLITTHEVTKAVQARKEEKVRKAQQQLEESRQKLQS
Sbjct: 61 RRTVRLTRVKLLKPKETLLLGHAYRLITTHEVTKAVQARKEEKVRKAQQQLEESRQKLQS 120
Query: 121 KXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDASLDQVGLHGSEW 166
K LDASLDQVGLHGSEW
Sbjct: 121 KARAAASAAAEVDEAAEENDNDSDNFDDEAALDASLDQVGLHGSEW 166
>Os06g0236300 Conserved hypothetical protein
Length = 189
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/122 (59%), Positives = 84/122 (68%), Gaps = 12/122 (9%)
Query: 1 MGNCQAAEAAAVVIQHPGGRVERLCWSTSAAEVMRANPGHYIALVTLRVAEE-------- 52
MGNCQAAEAA VV+QHPGGRVERL W+T+AAEVMRANPGHY+ALVTLRVAEE
Sbjct: 1 MGNCQAAEAATVVVQHPGGRVERLYWATTAAEVMRANPGHYVALVTLRVAEEKRPPPPPP 60
Query: 53 ----RQDGDGGAXXXXXXXXXXXXXPKETLLLGHAYRLITTHEVTKAVQARKEEKVRKAQ 108
R + G P++TLLLG AYRLIT EVT+A+QA+KEEK R+A
Sbjct: 61 PPPARAERRGTGTGTVRVTRVKLLKPRDTLLLGQAYRLITVDEVTRALQAKKEEKSRRAA 120
Query: 109 QQ 110
Q
Sbjct: 121 AQ 122
>Os09g0381600 Conserved hypothetical protein
Length = 208
Score = 126 bits (316), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 71/133 (53%), Positives = 85/133 (63%), Gaps = 17/133 (12%)
Query: 1 MGNCQAAEAAAVVIQHPGGRVERLCWSTSAAEVMRANPGHYIALVTLRV-----AEERQD 55
MGNCQAAEAAAVVIQHPGG+VERL W T+AA+VMRANPGHY+ALV LR+ A
Sbjct: 1 MGNCQAAEAAAVVIQHPGGKVERLYWPTTAADVMRANPGHYVALVILRISADKAASAAAA 60
Query: 56 GDGGAX---------XXXXXXXXXXXXPKETLLLGHAYRLITTHEVTKAVQARKEEKVRK 106
GD PK+TLLLG YRLIT+ EVTKA++ARK EK+R+
Sbjct: 61 GDNKTNAGGATGGGGGGAKITRVKLLKPKDTLLLGQVYRLITSQEVTKALRARKNEKMRR 120
Query: 107 AQ---QQLEESRQ 116
+ QQ E+ R+
Sbjct: 121 CEAIRQQHEQLRR 133
>Os08g0420700 Conserved hypothetical protein
Length = 189
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 79/125 (63%), Gaps = 16/125 (12%)
Query: 1 MGNCQAAEAAAVVIQHPGGRVERLCWSTSAAEVMRANPGHYIALVTLRVAEERQD----- 55
MGNCQAAE AAVVIQHPGG+VERL W +AA+VMR+NPGHY+ALV LRV+
Sbjct: 1 MGNCQAAEVAAVVIQHPGGKVERLYWPATAADVMRSNPGHYVALVLLRVSASSSGGGGGG 60
Query: 56 -----------GDGGAXXXXXXXXXXXXXPKETLLLGHAYRLITTHEVTKAVQARKEEKV 104
GD PKETLLLG YRL+T+ EVTKA+QAR++EK+
Sbjct: 61 KAEHSAVGAAVGDESGGAAAKITKIKLLKPKETLLLGKVYRLVTSQEVTKALQARRQEKM 120
Query: 105 RKAQQ 109
R+ ++
Sbjct: 121 RRCKE 125
>Os03g0200200 Conserved hypothetical protein
Length = 215
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 1 MGNCQAAEAAAVVIQHPGG-RVERLCWSTSAAEVMRANPGHYIALVTLRVAEERQDGDGG 59
MGNCQAAE A VVIQHPGG R ER W+ SA VM ANPGHY+A V +
Sbjct: 1 MGNCQAAEVATVVIQHPGGGRTERAYWAMSAGAVMAANPGHYVAAVI--TSPPAAGASSA 58
Query: 60 AXXXXXXXXXXXXXPKETLLLGHAYRLITTHEVTKAVQARKEEKVRKA 107
P +TLLLG YRL++ EV + +++ K+ +A
Sbjct: 59 TPAAAPVKHLKLLRPDDTLLLGRVYRLVSFEEVLREFASKRHVKLSRA 106
>Os02g0607400
Length = 971
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 49/82 (59%), Gaps = 7/82 (8%)
Query: 36 ANPGHYIALVTLRVAEERQD-------GDGGAXXXXXXXXXXXXXPKETLLLGHAYRLIT 88
ANPG+YIALVTLRVAEE + + P++TLLLG AYRLIT
Sbjct: 850 ANPGNYIALVTLRVAEEMRPPLPPPARAERHGTGTVRVTRVKLLKPRDTLLLGQAYRLIT 909
Query: 89 THEVTKAVQARKEEKVRKAQQQ 110
EVT+ +QA+KEEK R+A Q
Sbjct: 910 VDEVTRVLQAKKEEKSRRAAAQ 931
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.127 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,098,213
Number of extensions: 118778
Number of successful extensions: 358
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 354
Number of HSP's successfully gapped: 6
Length of query: 166
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 73
Effective length of database: 12,179,899
Effective search space: 889132627
Effective search space used: 889132627
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 152 (63.2 bits)