BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0721600 Os02g0721600|AK111506
(446 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0721600 Similar to WD-repeat protein-like 880 0.0
Os08g0497600 WD40-like domain containing protein 608 e-174
Os06g0171900 Similar to GAMYB-binding protein (Fragment) 547 e-156
Os08g0408200 Similar to GAMYB-binding protein (Fragment) 446 e-125
Os03g0386000 Similar to WD domain protein-like 436 e-122
AK108953 74 3e-13
>Os02g0721600 Similar to WD-repeat protein-like
Length = 446
Score = 880 bits (2273), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/446 (94%), Positives = 423/446 (94%)
Query: 1 MSNYHXXXXXXXXXXXXXXXXXXXXXXXNYERGMRDSDSEDEEHGQSNDKIPDTSSVDAR 60
MSNYH NYERGMRDSDSEDEEHGQSNDKIPDTSSVDAR
Sbjct: 1 MSNYHEDHIEEMEDDYDMDDTADDMGEENYERGMRDSDSEDEEHGQSNDKIPDTSSVDAR 60
Query: 61 KGKDIQGIPWEKLAITRDKYRQTRLDQYKNYENMPNSGEAAAKECKPTEKGGMYYEFRRN 120
KGKDIQGIPWEKLAITRDKYRQTRLDQYKNYENMPNSGEAAAKECKPTEKGGMYYEFRRN
Sbjct: 61 KGKDIQGIPWEKLAITRDKYRQTRLDQYKNYENMPNSGEAAAKECKPTEKGGMYYEFRRN 120
Query: 121 TRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVLHWSALSGLDTELMNVQGHVAPREKHP 180
TRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVLHWSALSGLDTELMNVQGHVAPREKHP
Sbjct: 121 TRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVLHWSALSGLDTELMNVQGHVAPREKHP 180
Query: 181 GSLLEGFSGTQVSTLSVKDNLLVAGGFQGELICKHLDREGISFCCRTTYDENAITNAVEI 240
GSLLEGFSGTQVSTLSVKDNLLVAGGFQGELICKHLDREGISFCCRTTYDENAITNAVEI
Sbjct: 181 GSLLEGFSGTQVSTLSVKDNLLVAGGFQGELICKHLDREGISFCCRTTYDENAITNAVEI 240
Query: 241 FNTTSGAVHFMASNNDSGVRDYDMERFQLYKHFQFEWPVNHTALSPDRKLAVIVGDDPNG 300
FNTTSGAVHFMASNNDSGVRDYDMERFQLYKHFQFEWPVNHTALSPDRKLAVIVGDDPNG
Sbjct: 241 FNTTSGAVHFMASNNDSGVRDYDMERFQLYKHFQFEWPVNHTALSPDRKLAVIVGDDPNG 300
Query: 301 LLIDANSGKTLHSLKGHFDYSFASAWSPDGRTFATGNQDKTCRIWDARNLSKSLHVLRGN 360
LLIDANSGKTLHSLKGHFDYSFASAWSPDGRTFATGNQDKTCRIWDARNLSKSLHVLRGN
Sbjct: 301 LLIDANSGKTLHSLKGHFDYSFASAWSPDGRTFATGNQDKTCRIWDARNLSKSLHVLRGN 360
Query: 361 LGAIRSIRFTSDGQFMSMAEPADFVHVFDVGSDYTRRQELDFFGEISGMSFSPDTDMLFV 420
LGAIRSIRFTSDGQFMSMAEPADFVHVFDVGSDYTRRQELDFFGEISGMSFSPDTDMLFV
Sbjct: 361 LGAIRSIRFTSDGQFMSMAEPADFVHVFDVGSDYTRRQELDFFGEISGMSFSPDTDMLFV 420
Query: 421 GVWDRTYGSLLQFGRLYNHSYLDSLC 446
GVWDRTYGSLLQFGRLYNHSYLDSLC
Sbjct: 421 GVWDRTYGSLLQFGRLYNHSYLDSLC 446
>Os08g0497600 WD40-like domain containing protein
Length = 432
Score = 608 bits (1568), Expect = e-174, Method: Compositional matrix adjust.
Identities = 277/411 (67%), Positives = 346/411 (84%)
Query: 34 MRDSDSEDEEHGQSNDKIPDTSSVDARKGKDIQGIPWEKLAITRDKYRQTRLDQYKNYEN 93
M DSD +D+E+GQ + DTS+VD +KGKDIQGIPW+ L+ +RD+YR+TR+ QY N+EN
Sbjct: 20 MGDSDFDDDEYGQPIESKEDTSAVDVKKGKDIQGIPWDNLSFSRDRYRKTRMVQYANFEN 79
Query: 94 MPNSGEAAAKECKPTEKGGMYYEFRRNTRSVKSTILHFQLRNLVWATSKHDVYLMSHFSV 153
+PNSG+ + K C P +KG +YYEF+ NTRSVK TILHFQLRNLVWAT++HDVYL+S SV
Sbjct: 80 VPNSGKNSEKVCTPVDKGALYYEFQYNTRSVKPTILHFQLRNLVWATTRHDVYLLSQRSV 139
Query: 154 LHWSALSGLDTELMNVQGHVAPREKHPGSLLEGFSGTQVSTLSVKDNLLVAGGFQGELIC 213
LHWS + +++++QGH+ P EKH G++ EGF QVSTL+V+ NLLVAGGF+GELIC
Sbjct: 140 LHWSPFASEKHKVIDLQGHITPSEKHQGNVSEGFYQAQVSTLAVRGNLLVAGGFRGELIC 199
Query: 214 KHLDREGISFCCRTTYDENAITNAVEIFNTTSGAVHFMASNNDSGVRDYDMERFQLYKHF 273
K LDREGIS+CC++T+D+N ITN++EIF SG+VHF+ASNND GVRD+DME+FQ+ +F
Sbjct: 200 KFLDREGISYCCKSTHDDNGITNSLEIFEKPSGSVHFLASNNDCGVRDFDMEKFQICNNF 259
Query: 274 QFEWPVNHTALSPDRKLAVIVGDDPNGLLIDANSGKTLHSLKGHFDYSFASAWSPDGRTF 333
+F W VNHT+LSPD KL IVGD+P GL++D NSGKT+H L+GH DYSFASAW+PDGRTF
Sbjct: 260 RFPWAVNHTSLSPDGKLVAIVGDNPEGLIVDTNSGKTVHELRGHLDYSFASAWNPDGRTF 319
Query: 334 ATGNQDKTCRIWDARNLSKSLHVLRGNLGAIRSIRFTSDGQFMSMAEPADFVHVFDVGSD 393
ATGNQDKTCRIWD RNLSKS+ VL GN+GAIRSIR+TSDG+F++MAEPADFVH+FDVGS
Sbjct: 320 ATGNQDKTCRIWDIRNLSKSVAVLGGNMGAIRSIRYTSDGRFLAMAEPADFVHIFDVGSG 379
Query: 394 YTRRQELDFFGEISGMSFSPDTDMLFVGVWDRTYGSLLQFGRLYNHSYLDS 444
Y R+Q +DFFGEISG+SFSPDT+ LF+GV DRTY SLLQ+ RL +SYLDS
Sbjct: 380 YRRKQVVDFFGEISGISFSPDTEALFIGVHDRTYSSLLQYNRLRFYSYLDS 430
>Os06g0171900 Similar to GAMYB-binding protein (Fragment)
Length = 457
Score = 547 bits (1410), Expect = e-156, Method: Compositional matrix adjust.
Identities = 255/396 (64%), Positives = 306/396 (77%)
Query: 50 KIPDTSSVDARKGKDIQGIPWEKLAITRDKYRQTRLDQYKNYENMPNSGEAAAKECKPTE 109
+I DTS+ +AR GKDIQGIPWE+L ITR YR+ RL QYKNYEN P SGE K CK +
Sbjct: 61 RITDTSAAEARAGKDIQGIPWERLQITRSDYRKARLVQYKNYENFPQSGELMDKICKQVD 120
Query: 110 KGGMYYEFRRNTRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVLHWSALSGLDTELMNV 169
K YYEF NTR VK +ILHFQLRNL+WATSKHDVY MS+ +V HWS+LS +E+++
Sbjct: 121 KISKYYEFHYNTRLVKPSILHFQLRNLLWATSKHDVYFMSNSTVGHWSSLSHNLSEVLDF 180
Query: 170 QGHVAPREKHPGSLLEGFSGTQVSTLSVKDNLLVAGGFQGELICKHLDREGISFCCRTTY 229
GHVAP +KHPGSLLEGFSG QVSTLSV + LLVAGGFQGELICK + + FC RTT
Sbjct: 181 SGHVAPAQKHPGSLLEGFSGVQVSTLSVNEGLLVAGGFQGELICKVVGDRDVKFCTRTTL 240
Query: 230 DENAITNAVEIFNTTSGAVHFMASNNDSGVRDYDMERFQLYKHFQFEWPVNHTALSPDRK 289
+NAITNA++I + SG++ SNND GVR++DME FQL HF + WPVNHT++SPDRK
Sbjct: 241 SDNAITNAIDIHRSASGSLRVTVSNNDCGVREFDMETFQLLNHFSYNWPVNHTSVSPDRK 300
Query: 290 LAVIVGDDPNGLLIDANSGKTLHSLKGHFDYSFASAWSPDGRTFATGNQDKTCRIWDARN 349
L +VGDD + LL+D+ +GK +L GH DYSFASAW PDGRTFATGNQDKTCR+WD RN
Sbjct: 301 LLAVVGDDRDALLVDSRNGKVTSTLVGHLDYSFASAWHPDGRTFATGNQDKTCRVWDVRN 360
Query: 350 LSKSLHVLRGNLGAIRSIRFTSDGQFMSMAEPADFVHVFDVGSDYTRRQELDFFGEISGM 409
LS SL VLRGN+GAIR IR++SDGQFM +EPADFVHV+ +DY +RQE+DFFGEISG+
Sbjct: 361 LSTSLSVLRGNIGAIRCIRYSSDGQFMLFSEPADFVHVYSAAADYKKRQEIDFFGEISGI 420
Query: 410 SFSPDTDMLFVGVWDRTYGSLLQFGRLYNHSYLDSL 445
S SPD + LFVGV DR Y SLL + +++ YLDS
Sbjct: 421 SLSPDDESLFVGVCDRVYASLLHYRMVHSFGYLDSF 456
>Os08g0408200 Similar to GAMYB-binding protein (Fragment)
Length = 444
Score = 446 bits (1148), Expect = e-125, Method: Compositional matrix adjust.
Identities = 203/402 (50%), Positives = 283/402 (70%), Gaps = 2/402 (0%)
Query: 44 HGQSNDKIPDTSSVDARKGKDIQGIPWEKLAITRDKYRQTRLDQYKNYENMPNSGEAAAK 103
H + + D S D R GKD+QGIPWEK+ RD+YR+ ++ Y+NY+N+ + E A K
Sbjct: 44 HNNQENPLTDVSVEDVRDGKDMQGIPWEKIVFRRDQYREMKMKNYRNYQNLSYAREEALK 103
Query: 104 ECKPTEKGGMYYEFRRNTRSVKSTILHFQLRNLVWATSKHDVYLMSHFSVLHWSALSGLD 163
+CK EK YY+F+ NTR + +I+HFQLRNLVWAT+KHDVY + + SV HWS+L
Sbjct: 104 DCKKVEKDSPYYDFQYNTRRARPSIVHFQLRNLVWATTKHDVYTVHNQSVTHWSSLDQTS 163
Query: 164 TELMNVQGHVAPREKHPGSLLEGFSGTQVSTLSVKDNLLVAGGFQGELICKHLDREGISF 223
TEL+N + P+++ GS + + QV+T++V D+LLV GGFQGELICK L+ +G+ F
Sbjct: 164 TELINADDCIIPKQRGHGS--QSVAMVQVTTMAVDDSLLVIGGFQGELICKRLEDDGVLF 221
Query: 224 CCRTTYDENAITNAVEIFNTTSGAVHFMASNNDSGVRDYDMERFQLYKHFQFEWPVNHTA 283
R T DENAITN++EI+ +G+ +A+NND VR +D+E F L KH+ F W VN +
Sbjct: 222 STRVTDDENAITNSLEIYQDPTGSRRLVAANNDCSVRIFDIEYFDLLKHYVFPWSVNSVS 281
Query: 284 LSPDRKLAVIVGDDPNGLLIDANSGKTLHSLKGHFDYSFASAWSPDGRTFATGNQDKTCR 343
+SP L ++GD +GL++D GK + +LKGH DYSFASAW PDG ATG+QD TCR
Sbjct: 282 VSPKGGLFAVLGDHEDGLVVDPKCGKAIGALKGHLDYSFASAWHPDGNILATGSQDTTCR 341
Query: 344 IWDARNLSKSLHVLRGNLGAIRSIRFTSDGQFMSMAEPADFVHVFDVGSDYTRRQELDFF 403
+WD RNLS+S+ VL G +G+IR I+F+SDG+F++ AEP DFVH++D +DY R E+D F
Sbjct: 342 LWDIRNLSESVAVLGGRMGSIRCIKFSSDGRFLATAEPVDFVHIYDSYADYGRSHEIDLF 401
Query: 404 GEISGMSFSPDTDMLFVGVWDRTYGSLLQFGRLYNHSYLDSL 445
GEI+G+SFSPD + L+VG+ D TYG L++F R + H YL+ +
Sbjct: 402 GEIAGLSFSPDAEALYVGIADPTYGGLIEFNRRHQHHYLNCM 443
>Os03g0386000 Similar to WD domain protein-like
Length = 402
Score = 436 bits (1120), Expect = e-122, Method: Compositional matrix adjust.
Identities = 203/382 (53%), Positives = 274/382 (71%), Gaps = 8/382 (2%)
Query: 68 IPWEKLAITRDKYRQTRLDQYKNYENMPNSGEAAAKECKPTEKGGMYYEFRRNTRSVKST 127
IPWE+L +R++YR+ RL QYKNYEN+ + KECK E+ +Y+F NTR VKST
Sbjct: 20 IPWERLNYSRNQYREMRLRQYKNYENLTMPRDGLEKECKQVERKDTFYDFHLNTRLVKST 79
Query: 128 ILHFQLRNLVWATSKHDVYLMSHFSVLHWSALSGLDTELMNVQGHVAPREKHPGSLLEGF 187
I+HFQLRNL+WATSKHDVYLM ++SV+HWS+L E++NV G +AP + G++
Sbjct: 80 IVHFQLRNLLWATSKHDVYLMQNYSVMHWSSLLQRGKEVLNVAGQLAPSQNVRGAM--PL 137
Query: 188 SGTQVSTLSVKDNLLVAGGFQGELICKHLDREGISFCCRTTYDENAITNAVEIFNTTSGA 247
S Q+ST++VK NL+VAGGFQGELICK++D+ G++FC T + N+ITNAV+I+ +G
Sbjct: 138 SRVQISTMAVKGNLMVAGGFQGELICKYVDKPGVAFCTNLTGNNNSITNAVDIYQAPNGG 197
Query: 248 VHFMASNNDSGVRDYDMERFQLYKHFQFEWPVNHTALSPDRKLAVIVGDDPNGLLIDANS 307
+NND VR +D ERF L HF F W VN+T++SPD KL ++GD + L+ D+ S
Sbjct: 198 TRITTANNDCVVRTFDTERFSLISHFAFPWSVNNTSVSPDGKLLAVLGDSSDCLIADSQS 257
Query: 308 GKTLHSLKGHFDYSFASAWSPDGRTFATGNQDKTCRIWDARNLSKSLHVLRGNLGAIRSI 367
GK + LKGH DYSF+SAW PDGR ATGNQD+TCR+WD RN+S+S+ VL G +GA+R +
Sbjct: 258 GKEMARLKGHLDYSFSSAWHPDGRVVATGNQDRTCRVWDVRNMSRSVAVLEGRIGAVRGL 317
Query: 368 RFTSDGQFMSMAEPADFVHVFDVGSDYTRRQELDFFGEISGMSFSP------DTDMLFVG 421
R++ DG+F++ +EPADFVHV+D + Y QE+D FGEI+G++FSP + LFV
Sbjct: 318 RYSPDGRFLAASEPADFVHVYDAAAGYADAQEIDLFGEIAGVAFSPAGNNGGGGEALFVS 377
Query: 422 VWDRTYGSLLQFGRLYNHSYLD 443
+ DRTYGSLL+F R H YLD
Sbjct: 378 IADRTYGSLLEFHRRRRHGYLD 399
>AK108953
Length = 331
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 114/268 (42%), Gaps = 28/268 (10%)
Query: 126 STILHFQLRNLVWAT-SKHDVYLMSHFSVLHWSALSGLDTELMNVQGHVAPREKHPGSLL 184
++I H+QLR+L+ A ++H+ Y +H + + DT+ S L
Sbjct: 23 TSIHHWQLRDLISAADTEHEFY------CVHDTKIYCYDTDTKQ-------------SKL 63
Query: 185 EGFSGTQVSTLSVKDNLLVAGGFQGELICKHLDREGISFCCRTTYDENAITNAVEIFNTT 244
G ++++ + + + AGG GEL + L + F + NA+ + +
Sbjct: 64 VSNLGFTPNSMTCRGDFVAAGGLHGELEVRQLACGEVCF---KGAVGTTVNNALHLARIS 120
Query: 245 SGAVHFMASNNDSGVRDYDMERFQLYKHFQFEWPVNHTALSPDRKLAVIVGDDPNGLLID 304
G ND+ ++ Y + + + P+N+ ALSPD + V VGD LL
Sbjct: 121 GGEARLFVCCNDNTIKVYKLPSMESATVIRCPCPINYAALSPDGRHLVAVGDCNPTLLYQ 180
Query: 305 ANSGK--TLHSLKGHFDYSFASAWSPDGRTFATGNQDKTCRIWDARNLSKSLHVLRGNLG 362
A L S D AW+ G +F++ QD +WD R S +
Sbjct: 181 ATPTGFVQLASFTEASDVGMCCAWNAHGTSFSSCAQDGAVGVWDQR--SGACIARLSCST 238
Query: 363 AIRSIRFTSDG-QFMSMAEPADFVHVFD 389
A R ++F++ ++++E + VH+FD
Sbjct: 239 ATRCVKFSAAPLDLLAVSEHEERVHLFD 266
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,949,077
Number of extensions: 626856
Number of successful extensions: 2047
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 2046
Number of HSP's successfully gapped: 7
Length of query: 446
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 342
Effective length of database: 11,605,545
Effective search space: 3969096390
Effective search space used: 3969096390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)