BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0690700 Os02g0690700|AK102342
(438 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0690700 Clathrin adaptor complex, medium chain family ... 840 0.0
Os01g0703600 Similar to Mu1 adaptin 345 4e-95
Os05g0543100 Similar to Clathrin coat assembly protein AP47... 345 5e-95
Os07g0620300 Clathrin adaptor complex, medium chain family ... 239 3e-63
AK062296 185 7e-47
Os05g0383100 Clathrin adaptor complex, medium chain family ... 141 1e-33
>Os02g0690700 Clathrin adaptor complex, medium chain family protein
Length = 438
Score = 840 bits (2169), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/438 (95%), Positives = 419/438 (95%)
Query: 1 MPVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRMHIMQTKELGTCPVRQIGGCSFLY 60
MPVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRMHIMQTKELGTCPVRQIGGCSFLY
Sbjct: 1 MPVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRMHIMQTKELGTCPVRQIGGCSFLY 60
Query: 61 MRXXXXXXXXXXXXXXXXXXXFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIM 120
MR FKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIM
Sbjct: 61 MRISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIM 120
Query: 121 DFGYPQNLSPEILKLYITQEGVRSPFSSKPSDKPVPNATLQVTGAVGWRREGLMYKKNEV 180
DFGYPQNLSPEILKLYITQEGVRSPFSSKPSDKPVPNATLQVTGAVGWRREGLMYKKNEV
Sbjct: 121 DFGYPQNLSPEILKLYITQEGVRSPFSSKPSDKPVPNATLQVTGAVGWRREGLMYKKNEV 180
Query: 181 FLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKEAQLKSRPA 240
FLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKEAQLKSRPA
Sbjct: 181 FLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKEAQLKSRPA 240
Query: 241 KSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKE 300
KSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKE
Sbjct: 241 KSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKE 300
Query: 301 LGRTRMEINVKVKSVFGAKMFALGVVVKVPVPKQTAKTSFQTTSGKAKYNASIDSLVWKI 360
LGRTRMEINVKVKSVFGAKMFALGVVVKVPVPKQTAKTSFQTTSGKAKYNASIDSLVWKI
Sbjct: 301 LGRTRMEINVKVKSVFGAKMFALGVVVKVPVPKQTAKTSFQTTSGKAKYNASIDSLVWKI 360
Query: 361 RKFPGQTEATMSAEVELISTMGEKKSWNRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYN 420
RKFPGQTEATMSAEVELISTMGEKKSWNRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYN
Sbjct: 361 RKFPGQTEATMSAEVELISTMGEKKSWNRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYN 420
Query: 421 TVEWVRYITRAGSYEIRC 438
TVEWVRYITRAGSYEIRC
Sbjct: 421 TVEWVRYITRAGSYEIRC 438
>Os01g0703600 Similar to Mu1 adaptin
Length = 429
Score = 345 bits (885), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 177/441 (40%), Positives = 265/441 (60%), Gaps = 18/441 (4%)
Query: 1 MPVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRMHIMQTK---ELGTCPVRQIGGCS 57
M A SA++ L+++G VL+ R YR DV + F ++ + E + V G +
Sbjct: 1 MAGAVSALFLLDIKGRVLVWRDYRGDVSALQAERFFTKLLDKEGDSEAHSPVVYDDAGVT 60
Query: 58 FLYMRXXXXXXXXXXXXXXXXXXXFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLD 117
+++++ F+ V +FK YF +E+++R+NFV++YELLD
Sbjct: 61 YMFIQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFE-ELEEESLRDNFVVVYELLD 119
Query: 118 EIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPSDKPVPNATLQVTGAVGWRREGLMYKK 177
E+MDFGYPQ +IL +I + R S +P + VT AV WR EG+ YKK
Sbjct: 120 EMMDFGYPQYTEAKILSEFIKTDAYRMEVSQRPP--------MAVTNAVSWRSEGIRYKK 171
Query: 178 NEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKEAQLKS 237
NEVFLD+VESVN+L++S G ++R DV G + M+ +LSGMP+ KLGLND++ LE + +
Sbjct: 172 NEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGR--- 228
Query: 238 RPAKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPT 297
A GK I+LDD+ FHQCV L RF +++T+SF+PPDG F+LM YR++ V V
Sbjct: 229 --ATKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQ 286
Query: 298 IKELGRTRMEINVKVKSVFGAKMFALGVVVKVPVPKQTAKTSFQTTSGKAKYNASIDSLV 357
I++ R+R+E+ VK +S F + A V ++VPVP + +T+ G A Y D++V
Sbjct: 287 IEKHSRSRIELMVKARSQFKERSTATNVEIEVPVPSDATNPNIRTSMGSAAYAPERDAMV 346
Query: 358 WKIRKFPGQTEATMSAEVELISTMGEKKS-WNRPPIQMEFQVPMFTASGLRVRFLKVWEK 416
WK++ FPG + AE L S E+ + + PI+++F++P FT SG++VR+LK+ EK
Sbjct: 347 WKVKSFPGGKDYMCRAEFSLPSITAEEAAPEKKAPIRVKFEIPYFTVSGIQVRYLKIIEK 406
Query: 417 SGYNTVEWVRYITRAGSYEIR 437
SGY + WVRYIT AG YE+R
Sbjct: 407 SGYQALPWVRYITMAGEYELR 427
>Os05g0543100 Similar to Clathrin coat assembly protein AP47 (Clathrin coat
associated protein AP47) (Golgi adaptor AP-1 47 kDa
protein) (HA1 47 kDa subunit) (Clathrin assembly protein
assembly protein complex 1 medium chain) (Uncoordinated
protein 101)
Length = 430
Score = 345 bits (884), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 180/442 (40%), Positives = 267/442 (60%), Gaps = 26/442 (5%)
Query: 4 AASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRMHIMQTK---ELGTCPVRQIGGCSFLY 60
A SA++ L+++G VL+ R YR DV + F ++ + E+ + V G S+++
Sbjct: 5 AVSALFLLDIKGRVLVWRDYRGDVSALQAERFFTKLLDKESDAEVLSPVVHDDAGVSYMF 64
Query: 61 MRXXXXXXXXXXXXXXXXXXXFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIM 120
++ F+ V +FK YF +E+++R+NFV++YELLDE+M
Sbjct: 65 IQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFE-ELEEESLRDNFVVVYELLDEMM 123
Query: 121 DFGYPQNLSPEILKLYITQEGVRSPFSSKPSDKPVPNATLQVTGAVGWRREGLMYKKNEV 180
DFGYPQ IL +I + R + +P + VT AV WR EG+ YKKNEV
Sbjct: 124 DFGYPQYTEAMILSEFIKTDAYRMEVTQRPP--------MAVTNAVSWRSEGIRYKKNEV 175
Query: 181 FLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKEAQLKSRPA 240
FLD+VESVN+L++S G ++R DV G++ M+ FLSGMP+ KLGLND++ LE + +
Sbjct: 176 FLDVVESVNILVNSNGQIVRSDVIGELKMRTFLSGMPECKLGLNDRVLLEAQGR-----T 230
Query: 241 KSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKE 300
GK I+LDD+ FHQCV L RF +++T+SF+PPDG F+LM YR++ V V +++
Sbjct: 231 TKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQVEK 290
Query: 301 LGRTRMEINVKVKSVFGAKMFALGVVVKVPVPKQTAKTSFQTTSGKAKYNASIDSLVWKI 360
R+R++I VK +S F + A V ++VPVP+ + + +T+ G A Y D++VWKI
Sbjct: 291 HSRSRIQITVKTRSQFKERSTATNVEIEVPVPEDSTNPNIRTSMGSAAYAPERDAMVWKI 350
Query: 361 RKFPGQTEATMSAEVELIST-----MGEKKSWNRPPIQMEFQVPMFTASGLRVRFLKVWE 415
+ FPG E AE L S M EKK+ PI+++F++P FT SG++VR+LK+ E
Sbjct: 351 KSFPGGKEYMCRAEFSLPSITSEDGMPEKKA----PIRVKFEIPYFTVSGIQVRYLKIIE 406
Query: 416 KSGYNTVEWVRYITRAGSYEIR 437
KSGY + WVRYIT AG YE+R
Sbjct: 407 KSGYQALPWVRYITMAGEYELR 428
>Os07g0620300 Clathrin adaptor complex, medium chain family protein
Length = 451
Score = 239 bits (610), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 142/450 (31%), Positives = 233/450 (51%), Gaps = 18/450 (4%)
Query: 6 SAIYFLNLRGDVLINRLYRDDVGGNMVDAF--RMHIMQTKELGTCP-VRQIGGCSFLYMR 62
S + L+ RGD ++ R YR +V + F ++ E P V + G ++++++
Sbjct: 3 SQFFVLSQRGDHIVFRDYRGEVPKGSAEIFFRKVKFWNDDEAEEAPPVFNVDGVNYIHVK 62
Query: 63 XXXXXXXXXXXXXXXXXXXFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDF 122
+ + + K Y G +ED++R NF+L+YELLDE++DF
Sbjct: 63 VAGLFFVVTTMVNVSPSLLLELLQRIARVTKDYLG-VLNEDSLRKNFILVYELLDEVIDF 121
Query: 123 GYPQNLSPEILKLYITQEGVRSPFSSKPSDKPVP---NATLQVTGAVGWRR----EGLMY 175
GYPQ S E+LK YI E + P P T ++ G + E
Sbjct: 122 GYPQTTSTEVLKSYIFNEPIMVDAGRLPPLGPAAMFMQGTKRMPGTAVTKSVVATEPGGK 181
Query: 176 KKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLND--KIGLEKEA 233
K+ E+F+DI+E +++ SS G +L ++ G I MK +L+G P+++L LN+ IG +
Sbjct: 182 KREEIFVDIIERISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIGRTGSS 241
Query: 234 QLKSRPAKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFR 293
R + G + LDD FH+ V+L F+ ++T+ +PPDGEF +M YRIT+ PFR
Sbjct: 242 SYDYRSSSGGGAVILDDCNFHESVHLDSFDIDRTLHLIPPDGEFAVMNYRITQEFKPPFR 301
Query: 294 VLPTIKELGRTRMEINVKVKSVFGAKMFALGVVVKVPVPKQTAKTSFQTTSGK----AKY 349
V I+E G +R E+ +K+++ F A + A +VV++PVP T + SF+ +G +
Sbjct: 302 VTALIEEAGPSRAEVLLKIRADFSANVTANTIVVQMPVPSYTMRASFELEAGAVGQTTDF 361
Query: 350 NASIDSLVWKIRKFPGQTEATMSAEVELISTMGEKKSWNRPPIQMEFQVPMFTASGLRVR 409
+ W ++K G +E T+ A++ + P+ M F +PM+ S L+VR
Sbjct: 362 KEGSRRIEWNLKKIVGGSEHTLRAKLTFSQESHGNLTKEAGPVNMNFTIPMYNTSKLQVR 421
Query: 410 FLKVWEKS-GYNTVEWVRYITRAGSYEIRC 438
+L++ +KS YN WVRY+T+A SY R
Sbjct: 422 YLQIAKKSKTYNPYRWVRYVTQANSYVARL 451
>AK062296
Length = 310
Score = 185 bits (469), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 156/269 (57%), Gaps = 7/269 (2%)
Query: 176 KKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLND--KIGLEKEA 233
K+ E+F+DI+E +++ SS G +L ++ G I MK +L+G P+++L LN+ IG +
Sbjct: 41 KREEIFVDIIERISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIGRTGSS 100
Query: 234 QLKSRPAKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFR 293
R + G + LDD FH+ V+L F+ ++T+ +PPDGEF +M YRIT+ PFR
Sbjct: 101 SYDYRSSSGGGAVILDDCNFHESVHLDSFDIDRTLHLIPPDGEFAVMNYRITQEFKPPFR 160
Query: 294 VLPTIKELGRTRMEINVKVKSVFGAKMFALGVVVKVPVPKQTAKTSFQTTSGK----AKY 349
V I+E G +R E+ +K+++ F A + A +VV++PVP T + SF+ +G +
Sbjct: 161 VTALIEEAGPSRAEVLLKIRADFSANVTANTIVVQMPVPSYTMRASFELEAGAVGQTTDF 220
Query: 350 NASIDSLVWKIRKFPGQTEATMSAEVELISTMGEKKSWNRPPIQMEFQVPMFTASGLRVR 409
+ W ++K G +E T+ A++ + P+ M F +PM+ S L+VR
Sbjct: 221 KEGSRRIEWNLKKIVGGSEHTLRAKLTFSQESHGNLTKEAGPVNMNFTIPMYNTSKLQVR 280
Query: 410 FLKVWEKS-GYNTVEWVRYITRAGSYEIR 437
+L++ +KS YN WVRY+T+A SY R
Sbjct: 281 YLQIAKKSKTYNPYRWVRYVTQANSYVAR 309
>Os05g0383100 Clathrin adaptor complex, medium chain family protein
Length = 417
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/364 (28%), Positives = 175/364 (48%), Gaps = 38/364 (10%)
Query: 82 FKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEG 141
+F+ + Y G +ED I++NFVL+Y++LDE+MD G+P P ILK I
Sbjct: 83 IEFLSRVADVLTDYLGD-LNEDIIKDNFVLVYQILDEMMDNGFPLTTEPNILKEMIAPPN 141
Query: 142 VRSPF-------SSKPSDKPVPNATLQVTGAVGWRREGLMYKKNEVFLDIVESVNLLMSS 194
+ S SS +K +P+A V WR + NEV+++IVE ++ ++
Sbjct: 142 IVSKMLNVVTGKSSNLGNK-LPDAA---ASFVPWRTTVVKDASNEVYVNIVEELDACVNR 197
Query: 195 KGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKEAQLKSRPAKSGKTIELDDVTFH 254
+G++++C+ GKI + L G+P+L L S TI ++DV FH
Sbjct: 198 EGALVKCEAYGKIQVNSSLPGVPELTLSF------------------SNPTI-INDVRFH 238
Query: 255 QCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTI-KELGRTRMEINVKVK 313
CV + S + +SFVPPDG+FELM YR+ + P V P + + G R+ + V +K
Sbjct: 239 PCVRFRPWESNQILSFVPPDGQFELMSYRVKKLKTTPIYVKPQLTSDSGNCRVNVMVGIK 298
Query: 314 SVFGAKMFALGVVVKVPVPKQTAKTSFQTTSGKAKYNASIDSLVWKIRKFPGQTEATMSA 373
+ G + + + V+ +P A G A + W I + P ++S
Sbjct: 299 NDPGKTIDS--ITVQFRLPPLIASADLTANYGTVDILAD-QTCFWTIGQIPKDKAPSLSG 355
Query: 374 EVELISTMGEKKSWNRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYNTVEWVRYITRAGS 433
+ L + ++ P +++F++ SGL++ L+V + + + R T+AG
Sbjct: 356 NLRLEEGLTHLHTF--PTFEVKFKIMGVALSGLQIDKLEV-KNTPNAPYKGFRAQTQAGR 412
Query: 434 YEIR 437
YE+R
Sbjct: 413 YEVR 416
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,409,246
Number of extensions: 513762
Number of successful extensions: 1032
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1013
Number of HSP's successfully gapped: 6
Length of query: 438
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 334
Effective length of database: 11,605,545
Effective search space: 3876252030
Effective search space used: 3876252030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)