BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0610500 Os02g0610500|AK058536
(332 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0610500 Similar to CONSTANS-like protein CO9 (Fragment) 402 e-112
Os04g0497700 Similar to CONSTANS-like protein 269 2e-72
Os02g0178100 CCT domain containing protein 97 2e-20
Os09g0240200 Zinc finger, CONSTANS-type domain containing p... 88 1e-17
Os06g0275000 Hd1 81 1e-15
Os07g0261200 72 5e-13
>Os02g0610500 Similar to CONSTANS-like protein CO9 (Fragment)
Length = 332
Score = 402 bits (1033), Expect = e-112, Method: Compositional matrix adjust.
Identities = 222/332 (66%), Positives = 222/332 (66%)
Query: 1 MEAVEDKXXXXXXXXXXXXXXXXXWGLGTRACDSCGGEAARLYCRADGAFLCARCDXXXX 60
MEAVEDK WGLGTRACDSCGGEAARLYCRADGAFLCARCD
Sbjct: 1 MEAVEDKAMVGVGGAVAAGYSSSSWGLGTRACDSCGGEAARLYCRADGAFLCARCDARAH 60
Query: 61 XXXXXXXXVWLCEVCEHXXXXXXXXXXXXXXXXXXXXXIHSANPLARRHERLPVAPFFGP 120
VWLCEVCEH IHSANPLARRHERLPVAPFFGP
Sbjct: 61 GAGSRHARVWLCEVCEHAPAAVTCRADAAALCAACDADIHSANPLARRHERLPVAPFFGP 120
Query: 121 LXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSWLLPEPDDNSHEDSXXXXXXXXX 180
L SWLLPEPDDNSHEDS
Sbjct: 121 LADAPQPFPFSQAAADAAAAREEDADDDRSNEAEAASWLLPEPDDNSHEDSAAAADAFFA 180
Query: 181 XTGAYLGVDLDFARSMDGIKAIGVPVAPPELDLTAGSLFYPEHSMAHSLSSSEVAIVPDA 240
TGAYLGVDLDFARSMDGIKAIGVPVAPPELDLTAGSLFYPEHSMAHSLSSSEVAIVPDA
Sbjct: 181 DTGAYLGVDLDFARSMDGIKAIGVPVAPPELDLTAGSLFYPEHSMAHSLSSSEVAIVPDA 240
Query: 241 LXXXXXXXXXXXXXXXKGKEREARLMRYREKRKNRRFDKTIRYASRKAYAETRPRIKGRF 300
L KGKEREARLMRYREKRKNRRFDKTIRYASRKAYAETRPRIKGRF
Sbjct: 241 LSAGSAAPPMVVVVASKGKEREARLMRYREKRKNRRFDKTIRYASRKAYAETRPRIKGRF 300
Query: 301 AKRTADADDDDEAPCSPAFSALAASDGVVPSF 332
AKRTADADDDDEAPCSPAFSALAASDGVVPSF
Sbjct: 301 AKRTADADDDDEAPCSPAFSALAASDGVVPSF 332
>Os04g0497700 Similar to CONSTANS-like protein
Length = 333
Score = 269 bits (688), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 150/280 (53%), Positives = 163/280 (58%), Gaps = 12/280 (4%)
Query: 25 WGLGTRACDSCGGEAARLYCRADGAFLCARCDXXXXXXXXXXXXVWLCEVCEHXXXXXXX 84
WGL RACD+CGGEAARL+CRAD AFLCA CD VWLCEVCEH
Sbjct: 15 WGLAARACDACGGEAARLFCRADAAFLCAGCDARAHGPGSRHARVWLCEVCEHAPAAVTC 74
Query: 85 XXXXXXXXXXXXXXIHSANPLARRHERLPVAPFFGPLXXXXXXXXXXXXXXXXXXXXXXX 144
IHSANPLARRHERLPVAPFFG L
Sbjct: 75 RADAAALCAACDADIHSANPLARRHERLPVAPFFGALADAPKPGSGAHGGDAAAADDDGS 134
Query: 145 XXXXXXXXXXXXSWLLPEPDDNSHEDSXXXXXXXXXXTGAYLGVDLDFARSMDGIKAIGV 204
SWLLPEPD + + + YL DLDFARSMD IKAIGV
Sbjct: 135 NDAEAA------SWLLPEPDHGQKDGAVGATDELYADSDPYL--DLDFARSMDDIKAIGV 186
Query: 205 PVAPPELDLTAGSLFYPEHSMAHSLSSSEVAIVPDALXXXXXXXXXXXXXXXKGKEREAR 264
PPELD+T G LFY +HSM HS+SSSE A+VPDA +G+EREAR
Sbjct: 187 QNGPPELDITGGKLFYSDHSMNHSVSSSEAAVVPDA----AAGGGAPMPVVSRGREREAR 242
Query: 265 LMRYREKRKNRRFDKTIRYASRKAYAETRPRIKGRFAKRT 304
LMRYREKRK+RRF+KTIRYASRKAYAETRPRIKGRFAKRT
Sbjct: 243 LMRYREKRKSRRFEKTIRYASRKAYAETRPRIKGRFAKRT 282
>Os02g0178100 CCT domain containing protein
Length = 201
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 55/72 (76%), Gaps = 3/72 (4%)
Query: 261 REARLMRYREKRKNRRFDKTIRYASRKAYAETRPRIKGRFAKRTADADDDDEAPCSPAFS 320
R ARLMRYREKRKNRRF+KTIRYASRKAYAETRPR+KGRFAKR ADD D A P
Sbjct: 133 RAARLMRYREKRKNRRFEKTIRYASRKAYAETRPRVKGRFAKR---ADDHDAAAPPPQIM 189
Query: 321 ALAASDGVVPSF 332
A GVVP+F
Sbjct: 190 LDFAGYGVVPTF 201
>Os09g0240200 Zinc finger, CONSTANS-type domain containing protein
Length = 335
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 55/74 (74%), Gaps = 6/74 (8%)
Query: 260 EREARLMRYREKRKNRRFDKTIRYASRKAYAETRPRIKGRFAKRTADADDDDEAPCSPAF 319
+REAR+ RYREKRK RRF+KTIRYASRKAYAETRPRIKGRFAKR+ D + F
Sbjct: 267 DREARVHRYREKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRS-----DTDLEVDQYF 321
Query: 320 SALAASD-GVVPSF 332
S A S GVVP+F
Sbjct: 322 STTADSSCGVVPTF 335
>Os06g0275000 Hd1
Length = 395
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 53/76 (69%), Gaps = 8/76 (10%)
Query: 260 EREARLMRYREKRKNRRFDKTIRYASRKAYAETRPRIKGRFAKRTADADDDDEAPCSPAF 319
+REAR++RYREK+K R+F+KTIRY +RKAYAE RPRIKGRFAKR+ D + F
Sbjct: 325 DREARVLRYREKKKARKFEKTIRYETRKAYAEARPRIKGRFAKRS-----DVQIEVDQMF 379
Query: 320 SALAASD---GVVPSF 332
S A SD G VP F
Sbjct: 380 STAALSDGSYGTVPWF 395
>Os07g0261200
Length = 287
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 45/59 (76%), Gaps = 5/59 (8%)
Query: 260 EREARLMRYREKRKNRRFDKTIRYASRKAYAETRPRIKGRFAKRTADADDDDEAPCSPA 318
EREA+LMRY+EKRK R ++K IRYASRKAYAE RPR++GRFAK + D EA P+
Sbjct: 219 EREAKLMRYKEKRKKRCYEKQIRYASRKAYAEMRPRVRGRFAK-----EPDQEAVAPPS 272
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,432,886
Number of extensions: 261938
Number of successful extensions: 958
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 949
Number of HSP's successfully gapped: 8
Length of query: 332
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 231
Effective length of database: 11,762,187
Effective search space: 2717065197
Effective search space used: 2717065197
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)