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Os09g0240200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, CONSTANS-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.4 (0.04) R2 : 0.895
β1 : -1.21 (0.174) R2dD : 0.0179 R2D : 0.0446
β2 : 5.76 (0.0992) R2dC : 0.78 R2C : 0.758
β3 : 2.28 (0.166) R2dE : 0.0721 R2E : 0.0914
β4 : 2.98 (0.44) R2dD*C : 0.0102 R2D*C : 0.00642
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.104 (0.0953) R2dN8 : 0.000555 R2N8 : -0.00189
σ : 0.718
deviance : 237.92
__
_____
C
peak time of C : 7.3
E
wheather : temperature
threshold : 20.51
memory length : 4368
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
234.35 0.719 10.5 -1.51 5.74 2.67 2.94 2.07 -0.23 7.3 19.99 4362 -- --
237.92 0.718 10.4 -1.21 5.76 2.28 2.98 -- -0.104 7.3 20.51 4368 -- --
257.67 0.748 10.5 -1.41 5.75 2.72 -- 2 -0.216 7.29 20 4368 -- --
260.79 0.752 10.4 -1.17 5.74 2.23 -- -- -0.115 7.3 20.6 4379 -- --
1972.9 2.07 10.6 -1.35 -- 3.01 -- 2.78 -0.107 -- 19.9 3541 -- --
326.76 0.847 10.6 -2.62 5.7 -- 3.12 -- -0.769 7.33 -- -- -- --
353.16 0.88 10.6 -2.56 5.71 -- -- -- -0.775 7.32 -- -- -- --
1769.42 1.96 10.7 -1 -- 2.68 -- -- 0.155 -- 26.2 2003 -- --
258.62 0.749 10.4 -- 5.71 2.53 -- -- 0.187 7.27 20.1 28902 -- --
2085.46 2.13 10.7 -2.46 -- -- -- -- -0.68 -- -- -- -- --
525.24 1.07 10.5 -- 5.69 -- -- -- -0.49 7.35 -- -- -- --
1783.95 1.97 10.4 -- -- 3.28 -- -- 0.451 -- 26 2019 -- --
2244.85 2.21 10.6 -- -- -- -- -- -0.407 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 221.57 humidity 70.0 43200 > th dose independent rect. 22 10
9 224.38 humidity 60.0 43200 < th dose independent rect. 22 11
11 224.69 humidity 70.0 43200 > th dose independent rect. 7 1
13 224.93 humidity 70.0 43200 < th dose dependent rect. 22 11
17 225.47 humidity 60.0 43200 < th dose independent rect. 1 8
29 226.10 temperature 20.0 4320 > th dose independent rect. 1 2
31 226.20 temperature 20.0 4320 > th dose independent rect. 23 4
32 226.20 temperature 20.0 4320 < th dose independent rect. 23 4
34 226.39 humidity 60.0 43200 < th dose independent rect. 6 3
40 226.51 temperature 20.0 4320 < th dose independent rect. 1 2
100 229.32 humidity 70.0 43200 < th dose dependent rect. 7 2
109 229.50 humidity 70.0 43200 < th dose independent rect. 16 2
132 229.95 temperature 20.0 4320 < th dose independent sin 11 NA
158 230.43 temperature 20.0 4320 > th dose independent sin 11 NA
159 230.44 precipitation 0.1 43200 > th dose independent rect. 2 4
168 230.60 precipitation 0.1 43200 < th dose independent rect. 2 4
170 230.60 precipitation 0.1 43200 < th dose dependent rect. 2 4
185 230.80 radiation 1.0 43200 < th dose dependent rect. 17 12
187 230.83 humidity 70.0 43200 > th dose independent rect. 17 1
200 231.07 radiation 1.0 43200 > th dose dependent rect. 17 1
203 231.08 precipitation 0.1 43200 > th dose dependent rect. 2 4
221 231.26 radiation 1.0 43200 < th dose dependent rect. 17 9
227 231.31 radiation 1.0 43200 < th dose dependent rect. 17 4
233 231.33 radiation 1.0 43200 < th dose dependent rect. 17 2
285 231.65 precipitation 0.1 43200 > th dose dependent rect. 4 2
288 231.67 atmosphere 1010.0 43200 > th dose independent rect. 19 1
293 231.72 precipitation 0.1 43200 > th dose independent rect. 4 2
295 231.74 atmosphere 1010.0 43200 > th dose independent rect. 21 1
296 231.74 atmosphere 1010.0 43200 > th dose independent rect. 19 3
299 231.76 atmosphere 1010.0 43200 > th dose independent rect. 19 5
303 231.79 atmosphere 1010.0 43200 > th dose independent rect. 23 1
309 231.82 atmosphere 1010.0 43200 > th dose dependent rect. 23 1
314 231.88 atmosphere 1010.0 43200 > th dose independent rect. 3 1
319 231.90 atmosphere 1010.0 43200 > th dose independent rect. 21 3
325 231.92 atmosphere 1010.0 43200 > th dose dependent rect. 21 3
327 231.94 atmosphere 1010.0 43200 < th dose independent rect. 19 1
328 231.95 atmosphere 1010.0 43200 < th dose independent rect. 3 1
331 231.95 atmosphere 1010.0 43200 > th dose dependent rect. 21 1
336 231.97 atmosphere 1010.0 43200 > th dose independent rect. 19 11
349 232.02 humidity 90.0 14400 > th dose independent rect. 23 3
436 232.29 atmosphere 1010.0 43200 < th dose independent rect. 18 11
476 232.41 atmosphere 1010.0 43200 > th dose independent sin 13 NA
486 232.42 atmosphere 1010.0 43200 < th dose independent rect. 1 4
487 232.42 atmosphere 1010.0 43200 < th dose independent rect. 24 6
500 232.45 radiation 10.0 43200 < th dose independent rect. 15 4
504 232.45 radiation 10.0 43200 < th dose independent rect. 15 12
533 232.48 radiation 1.0 43200 < th dose dependent rect. 17 15
546 232.51 humidity 80.0 43200 > th dose dependent rect. 18 1
635 232.69 radiation 30.0 43200 < th dose independent rect. 15 16
645 232.71 humidity 80.0 43200 < th dose independent rect. 12 7
651 232.73 atmosphere 1010.0 43200 < th dose independent rect. 11 1
674 232.78 atmosphere 1010.0 43200 < th dose independent rect. 23 2
683 232.81 radiation 30.0 43200 < th dose independent rect. 15 5
686 232.81 radiation 30.0 43200 < th dose independent rect. 15 14
690 232.82 radiation 30.0 43200 < th dose independent rect. 15 2
698 232.82 atmosphere 1010.0 43200 > th dose independent rect. 10 20
700 232.83 atmosphere 1010.0 43200 > th dose independent rect. 10 1
703 232.83 radiation 30.0 43200 < th dose independent rect. 15 12
712 232.85 radiation 30.0 43200 < th dose independent rect. 15 9
777 232.95 atmosphere 1010.0 43200 > th dose independent rect. 18 18
794 232.99 atmosphere 1010.0 43200 < th dose independent sin 13 NA
810 233.00 atmosphere 1010.0 43200 > th dose independent rect. 15 21
892 233.16 radiation 1.0 43200 < th dose dependent rect. 20 10
909 233.19 radiation 1.0 43200 < th dose dependent rect. 4 2
910 233.19 radiation 1.0 43200 < th dose dependent rect. 22 8
914 233.20 temperature 20.0 43200 < th dose dependent rect. 1 1
916 233.20 radiation 1.0 43200 < th dose dependent rect. 24 6
977 233.29 atmosphere 1010.0 43200 < th dose independent rect. 11 19