Os02g0610500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CONSTANS-like protein CO9 (Fragment).
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Os02g0610500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CONSTANS-like protein CO9 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 166.82 | 0.607 | 14 | 0.558 | 2.75 | -4.58 | 0.419 | 4.16 | 0.346 | 0.648 | 10.09 | 300 | 13.7 | 9.94 |
| 181.6 | 0.628 | 14 | 0.349 | 2.84 | -4.58 | 1.81 | -- | 0.32 | 0.633 | 9.684 | 327 | 13.7 | 9.83 |
| 166.62 | 0.601 | 14 | 0.554 | 2.8 | -4.63 | -- | 4.6 | 0.35 | 0.542 | 9.53 | 307 | 13.6 | 10 |
| 197.73 | 0.655 | 14 | 0.375 | 2.81 | -4.48 | -- | -- | 0.308 | 0.754 | 9.614 | 330 | 13.6 | 9.88 |
| 296.59 | 0.802 | 13.8 | 0.873 | -- | -4.31 | -- | 7.52 | 0.567 | -- | 16.68 | 365 | 10.6 | 11 |
| 295.39 | 0.806 | 13.9 | -0.0517 | 3.31 | -- | -0.669 | -- | 0.0776 | 5.54 | -- | -- | -- | -- |
| 296.46 | 0.806 | 13.9 | -0.055 | 3.3 | -- | -- | -- | 0.0803 | 5.52 | -- | -- | -- | -- |
| 236.34 | 0.716 | 13.9 | 0.486 | -- | -4.19 | -- | -- | 0.377 | -- | 7.587 | 570 | 4.91 | 14.8 |
| 199.05 | 0.657 | 14 | -- | 2.73 | -4.25 | -- | -- | 0.256 | 0.942 | 9.142 | 328 | 13.6 | 9.84 |
| 862.98 | 1.37 | 14 | 0.0537 | -- | -- | -- | -- | 0.161 | -- | -- | -- | -- | -- |
| 296.54 | 0.806 | 13.9 | -- | 3.3 | -- | -- | -- | 0.0864 | 5.52 | -- | -- | -- | -- |
| 237.54 | 0.718 | 14 | -- | -- | -4.25 | -- | -- | 0.262 | -- | 4.723 | 579 | 5.02 | 14.3 |
| 863.05 | 1.37 | 14 | -- | -- | -- | -- | -- | 0.155 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 170.64 | temperature | 10 | 270 | > th | dose dependent | rect. | 14 | 10 |
| 2 | 171.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 16 |
| 3 | 171.71 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 12 |
| 4 | 172.49 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 14 |
| 5 | 173.11 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 17 |
| 22 | 178.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 5 |
| 89 | 191.19 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 5 |
| 94 | 191.57 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 166 | 197.02 | temperature | 30 | 10 | < th | dose dependent | sin | 12 | NA |
| 173 | 197.35 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 9 |
| 207 | 199.28 | temperature | 30 | 270 | < th | dose dependent | sin | 16 | NA |
| 254 | 201.20 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 265 | 201.64 | temperature | 10 | 720 | > th | dose dependent | sin | 21 | NA |
| 266 | 201.66 | temperature | 20 | 720 | > th | dose dependent | sin | 20 | NA |
| 275 | 202.09 | temperature | 10 | 270 | > th | dose dependent | sin | 16 | NA |
| 323 | 204.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 357 | 205.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 17 |
| 369 | 206.01 | temperature | 10 | 10 | > th | dose dependent | sin | 13 | NA |
| 370 | 206.13 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 5 |
| 402 | 207.09 | temperature | 15 | 10 | > th | dose dependent | rect. | 16 | 10 |
| 423 | 208.01 | temperature | 25 | 270 | > th | dose independent | rect. | 14 | 9 |
| 466 | 209.25 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 16 |
| 486 | 209.85 | temperature | 25 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 553 | 211.46 | temperature | 30 | 720 | < th | dose dependent | sin | 20 | NA |
| 562 | 211.61 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 12 |
| 570 | 211.84 | temperature | 15 | 10 | > th | dose dependent | rect. | 5 | 20 |
| 586 | 212.05 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 1 |
| 623 | 212.67 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 4 |
| 663 | 213.49 | temperature | 25 | 270 | < th | dose independent | rect. | 15 | 12 |
| 708 | 214.10 | temperature | 25 | 270 | < th | dose independent | rect. | 11 | 16 |
| 734 | 214.52 | temperature | 25 | 720 | > th | dose independent | rect. | 12 | 8 |
| 749 | 214.76 | radiation | 20 | 10 | < th | dose dependent | sin | 10 | NA |
| 750 | 214.78 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 19 |
| 810 | 215.83 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 864 | 216.58 | radiation | 1 | 270 | < th | dose dependent | rect. | 15 | 13 |
| 943 | 217.36 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 18 |
| 959 | 217.44 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 967 | 217.51 | radiation | 1 | 270 | < th | dose independent | rect. | 15 | 13 |