Os04g0497700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CONSTANS-like protein.
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Os04g0497700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CONSTANS-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.97 | 0.29 | 14.2 | 0.222 | 3.81 | 3.43 | -1.26 | -0.98 | -0.246 | 11.2 | 0.56 | 275 | 7.95 | -- |
| 38.24 | 0.288 | 14.2 | 0.127 | 3.68 | 3.38 | -0.351 | -- | -0.255 | 11.2 | 0.6416 | 308 | 8.4 | -- |
| 38.83 | 0.29 | 14.2 | 0.137 | 3.82 | 3.45 | -- | 0.134 | -0.26 | 11.2 | 0.77 | 283 | 8.02 | -- |
| 38.6 | 0.289 | 14.2 | 0.139 | 3.66 | 3.39 | -- | -- | -0.247 | 11.2 | 0.6495 | 311 | 8.39 | -- |
| 56.83 | 0.351 | 14.3 | 0.146 | -- | 3.12 | -- | 0.484 | -0.245 | -- | 2.092 | 1049 | 9.93 | -- |
| 93.85 | 0.454 | 14.2 | 0.0349 | 2.05 | -- | -0.208 | -- | -0.376 | 6.61 | -- | -- | -- | -- |
| 93.96 | 0.454 | 14.2 | 0.0317 | 2.05 | -- | -- | -- | -0.375 | 6.61 | -- | -- | -- | -- |
| 53.66 | 0.341 | 14.3 | 0.219 | -- | 3.25 | -- | -- | -0.192 | -- | 0.7401 | 1032 | 10 | -- |
| 39.13 | 0.291 | 14.2 | -- | 3.75 | 3.46 | -- | -- | -0.266 | 11.3 | 0.65 | 310 | 8.31 | -- |
| 313.21 | 0.827 | 14.3 | 0.0809 | -- | -- | -- | -- | -0.334 | -- | -- | -- | -- | -- |
| 93.99 | 0.453 | 14.2 | -- | 2.05 | -- | -- | -- | -0.379 | 6.61 | -- | -- | -- | -- |
| 55.04 | 0.346 | 14.3 | -- | -- | 3.23 | -- | -- | -0.206 | -- | 1.546 | 1048 | 10.1 | -- |
| 313.39 | 0.826 | 14.3 | -- | -- | -- | -- | -- | -0.343 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.34 | radiation | 1.0 | 270 | < th | dose dependent | sin | 14 | NA |
| 2 | 39.24 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 14 | 5 |
| 4 | 39.56 | radiation | 1.0 | 270 | < th | dose independent | sin | 14 | NA |
| 5 | 39.70 | radiation | 1.0 | 270 | > th | dose independent | sin | 14 | NA |
| 6 | 39.88 | radiation | 1.0 | 270 | > th | dose independent | rect. | 15 | 15 |
| 8 | 40.03 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 14 | 18 |
| 16 | 40.94 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 15 | 3 |
| 17 | 41.24 | temperature | 25.0 | 270 | > th | dose independent | rect. | 14 | 5 |
| 22 | 41.84 | radiation | 1.0 | 270 | > th | dose independent | rect. | 15 | 4 |
| 33 | 41.86 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 13 | 20 |
| 39 | 42.47 | temperature | 25.0 | 270 | > th | dose independent | rect. | 15 | 3 |
| 54 | 43.27 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 84 | 44.26 | humidity | 90.0 | 270 | < th | dose independent | rect. | 14 | 5 |
| 89 | 44.35 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 91 | 44.37 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 16 | 17 |
| 96 | 44.76 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 16 | 4 |
| 100 | 44.83 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 15 | 12 |
| 101 | 44.87 | temperature | 25.0 | 270 | > th | dose independent | rect. | 16 | 1 |
| 118 | 45.54 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 16 |
| 119 | 45.55 | humidity | 90.0 | 270 | < th | dose independent | rect. | 15 | 3 |
| 138 | 46.11 | radiation | 1.0 | 270 | > th | dose independent | rect. | 16 | 1 |
| 141 | 46.15 | radiation | 1.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 149 | 46.47 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 16 | 18 |
| 157 | 46.76 | radiation | 1.0 | 270 | < th | dose independent | rect. | 15 | 12 |
| 176 | 47.21 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 15 | 16 |
| 259 | 48.81 | temperature | 20.0 | 10 | > th | dose independent | rect. | 16 | 4 |
| 262 | 48.83 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 16 | 14 |
| 264 | 48.88 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 16 | 1 |
| 267 | 48.90 | wind | 1.0 | 270 | > th | dose independent | rect. | 14 | 5 |
| 271 | 48.99 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 5 |
| 272 | 48.99 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 5 |
| 289 | 49.36 | wind | 3.0 | 270 | > th | dose independent | rect. | 15 | 3 |
| 294 | 49.49 | humidity | 70.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 310 | 49.91 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 3 |
| 311 | 49.91 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 3 |
| 320 | 50.01 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 5 |
| 324 | 50.04 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 5 |
| 326 | 50.04 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 14 | 5 |
| 328 | 50.04 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 19 |
| 329 | 50.04 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 19 |
| 359 | 50.19 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 21 |
| 387 | 50.49 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 17 |
| 388 | 50.49 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 17 |
| 389 | 50.52 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 3 |
| 393 | 50.55 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 3 |
| 395 | 50.57 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 3 |
| 397 | 50.57 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 15 | 3 |
| 399 | 50.57 | temperature | 10.0 | 270 | > th | dose independent | rect. | 18 | 21 |
| 406 | 50.66 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 19 |
| 436 | 51.01 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 9 |
| 438 | 51.03 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 16 | 4 |
| 440 | 51.03 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 16 | 4 |
| 456 | 51.13 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 19 |
| 465 | 51.24 | wind | 1.0 | 10 | > th | dose independent | rect. | 16 | 4 |
| 482 | 51.44 | wind | 9.0 | 270 | < th | dose independent | rect. | 18 | 21 |
| 484 | 51.47 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 14 | 5 |
| 485 | 51.49 | humidity | 90.0 | 10 | < th | dose independent | rect. | 16 | 4 |
| 510 | 51.72 | temperature | 10.0 | 10 | > th | dose independent | rect. | 16 | 4 |
| 512 | 51.72 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 16 | 4 |
| 514 | 51.72 | radiation | 40.0 | 10 | < th | dose independent | rect. | 16 | 4 |
| 515 | 51.72 | temperature | 10.0 | 10 | > th | dose independent | rect. | 20 | 20 |
| 559 | 52.06 | wind | 9.0 | 10 | < th | dose independent | rect. | 16 | 4 |
| 570 | 52.13 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 15 | 3 |
| 575 | 52.19 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 20 | 20 |
| 581 | 52.26 | wind | 1.0 | 270 | > th | dose dependent | rect. | 15 | 3 |
| 585 | 52.35 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 9 | 16 |
| 599 | 52.50 | wind | 1.0 | 270 | > th | dose dependent | rect. | 14 | 5 |
| 603 | 52.52 | wind | 1.0 | 270 | > th | dose dependent | rect. | 16 | 1 |
| 634 | 52.80 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 15 |
| 636 | 52.80 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 656 | 53.00 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 16 | 4 |
| 659 | 53.02 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 16 | 4 |
| 666 | 53.06 | wind | 9.0 | 10 | < th | dose independent | rect. | 20 | 20 |
| 704 | 53.49 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 14 | 5 |
| 707 | 53.53 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 16 | 4 |
| 714 | 53.57 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 715 | 53.57 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 716 | 53.57 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 717 | 53.57 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 17 |
| 723 | 53.60 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 726 | 53.61 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 19 |
| 727 | 53.61 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 15 | 3 |
| 728 | 53.61 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 19 |
| 731 | 53.64 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 17 |
| 753 | 53.92 | temperature | 15.0 | 270 | > th | dose independent | rect. | 3 | 15 |
| 777 | 54.06 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 7 |
| 778 | 54.06 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 798 | 54.17 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 799 | 54.17 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 9 | 16 |
| 819 | 54.28 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 834 | 54.39 | wind | 9.0 | 270 | < th | dose independent | rect. | 18 | 9 |
| 835 | 54.39 | temperature | 10.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 837 | 54.39 | radiation | 20.0 | 270 | < th | dose independent | rect. | 18 | 9 |
| 841 | 54.39 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 911 | 54.72 | wind | 1.0 | 270 | > th | dose independent | rect. | 19 | 19 |
| 916 | 54.76 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 20 | 20 |
| 917 | 54.76 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 20 | 20 |
| 927 | 54.86 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 936 | 54.91 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 944 | 54.98 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 2 |
| 981 | 55.22 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 20 |
| 983 | 55.22 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 20 |
| 984 | 55.23 | humidity | 50.0 | 270 | > th | dose independent | rect. | 9 | 15 |
| 994 | 55.26 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 17 | 4 |
| 997 | 55.26 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 17 | 4 |