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Os06g0275000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hd1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.9 (0.0328) R2 : 0.901
β1 : 0.707 (0.12) R2dD : 0.00832 R2D : 0.00605
β2 : 2 (0.097) R2dC : 0.121 R2C : 0.365
β3 : -3.88 (0.09) R2dE : 0.528 R2E : 0.774
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.223 (0.0699) R2dN8 : 0.0027 R2N8 : -0.00236
σ : 0.612
deviance : 172.71
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_____
C
peak time of C : 19.2
E
wheather : temperature
threshold : -1.988
memory length : 215
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.52
open length of G : 9.03

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
153.77 0.583 8.89 0.763 2.02 -4.02 -1.19 1.88 0.257 19.3 3.628 220 4.46 9
161.44 0.592 8.91 0.785 1.99 -3.95 -1.64 -- 0.245 19.2 0.2414 217 4.45 9.12
155.76 0.581 8.9 0.754 1.91 -4.06 -- 2.42 0.242 19.1 1.538 212 4.52 9
172.71 0.612 8.9 0.707 2 -3.88 -- -- 0.223 19.2 -1.988 215 4.52 9.03
213.67 0.681 8.84 1.1 -- -5.12 -- 3.6 0.439 -- 1.029 278 2.68 9.9
292.67 0.802 9.01 0.553 4.91 -- -1.68 -- 0.109 21.7 -- -- -- --
303.29 0.816 9.01 0.615 4.91 -- -- -- 0.112 21.7 -- -- -- --
216.17 0.685 8.89 1.01 -- -5.04 -- -- 0.245 -- -6.093 355 2.27 9.4
186.31 0.636 8.93 -- 2.08 -3.69 -- -- 0.127 19.3 -4.139 212 4.58 9.05
1738.93 1.95 8.88 0.662 -- -- -- -- 0.106 -- -- -- -- --
313.27 0.828 9.02 -- 4.91 -- -- -- 0.0433 21.7 -- -- -- --
224.63 0.698 8.88 -- -- -4.91 -- -- 0.116 -- -8.49 333 2.57 9
1750.48 1.95 8.89 -- -- -- -- -- 0.0326 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 166.25 temperature 10.0 270 > th dose dependent rect. 4 9
5 173.11 temperature 10.0 10 > th dose dependent rect. 6 9
8 176.65 temperature 20.0 10 > th dose independent rect. 6 9
10 177.19 temperature 15.0 270 > th dose independent rect. 4 9
20 183.75 temperature 10.0 270 > th dose dependent rect. 23 6
22 184.52 precipitation 0.1 270 < th dose independent rect. 4 9
23 184.52 precipitation 0.1 270 < th dose dependent rect. 4 9
24 184.88 wind 9.0 270 < th dose independent rect. 13 15
25 184.97 wind 9.0 270 < th dose independent rect. 4 9
26 185.11 humidity 50.0 270 > th dose independent rect. 4 9
28 185.49 precipitation 0.1 270 < th dose independent rect. 13 15
29 185.49 precipitation 0.1 270 < th dose dependent rect. 13 15
31 185.76 atmosphere 995.0 270 > th dose independent rect. 4 9
32 185.76 atmosphere 1015.0 270 < th dose independent rect. 4 9
33 185.76 temperature 10.0 270 > th dose independent rect. 13 15
37 187.01 humidity 50.0 270 > th dose independent rect. 17 7
38 187.06 radiation 20.0 270 < th dose dependent rect. 16 8
43 187.92 atmosphere 1015.0 270 < th dose independent rect. 24 17
45 187.94 temperature 10.0 270 > th dose independent rect. 17 7
46 187.94 radiation 20.0 270 < th dose independent rect. 17 7
49 187.94 temperature 10.0 270 > th dose independent rect. 24 17
53 188.43 atmosphere 995.0 270 > th dose independent rect. 17 7
55 188.79 wind 9.0 270 < th dose independent rect. 17 7
58 189.13 wind 9.0 270 < th dose independent rect. 24 17
59 189.22 precipitation 0.1 270 < th dose independent rect. 24 17
60 189.22 precipitation 0.1 270 < th dose dependent rect. 24 17
66 190.09 atmosphere 995.0 270 > th dose independent rect. 24 17
73 190.69 radiation 40.0 270 < th dose independent rect. 13 15
74 190.92 temperature 30.0 270 < th dose independent rect. 17 7
79 191.68 precipitation 0.1 270 < th dose independent rect. 17 7
80 191.68 precipitation 0.1 270 < th dose dependent rect. 17 7
100 194.01 radiation 40.0 10 < th dose dependent rect. 14 16
102 194.09 wind 1.0 270 > th dose independent rect. 17 7
108 194.51 atmosphere 1015.0 270 < th dose independent rect. 23 19
113 194.69 atmosphere 995.0 270 > th dose independent rect. 18 5
125 194.92 temperature 10.0 270 > th dose independent rect. 18 5
127 194.92 radiation 20.0 270 < th dose independent rect. 18 5
130 194.92 temperature 10.0 270 > th dose independent rect. 23 19
133 194.98 temperature 15.0 270 > th dose independent rect. 23 6
134 195.06 atmosphere 1015.0 270 < th dose independent rect. 23 6
137 195.12 wind 9.0 270 < th dose independent rect. 18 5
144 195.32 radiation 1.0 270 < th dose independent rect. 23 6
146 195.33 radiation 10.0 270 < th dose dependent rect. 23 6
152 195.52 temperature 30.0 270 < th dose independent rect. 23 6
153 195.52 humidity 50.0 270 > th dose independent rect. 23 6
156 195.52 atmosphere 995.0 270 > th dose independent rect. 23 6
160 195.52 temperature 10.0 270 > th dose independent rect. 5 18
161 195.53 wind 9.0 270 < th dose independent rect. 23 6
169 195.72 wind 9.0 270 < th dose independent rect. 23 19
170 195.75 precipitation 0.1 270 < th dose independent rect. 23 6
171 195.75 precipitation 0.1 270 < th dose dependent rect. 23 6
178 196.00 precipitation 0.1 270 < th dose independent rect. 23 19
179 196.00 precipitation 0.1 270 < th dose dependent rect. 23 19
191 196.69 radiation 30.0 10 < th dose dependent rect. 2 17
207 197.12 wind 9.0 270 < th dose independent rect. 5 18
216 197.36 temperature 10.0 270 > th dose dependent rect. 1 2
232 197.58 radiation 40.0 10 < th dose dependent rect. 12 18
245 197.97 precipitation 0.1 270 < th dose independent rect. 18 5
246 197.97 precipitation 0.1 270 < th dose dependent rect. 18 5
251 197.98 humidity 50.0 270 > th dose dependent rect. 17 6
277 198.44 radiation 30.0 10 < th dose dependent rect. 24 19
281 198.60 radiation 1.0 270 < th dose independent rect. 23 16
284 198.66 precipitation 0.1 270 < th dose independent rect. 5 18
285 198.66 precipitation 0.1 270 < th dose dependent rect. 5 18
305 199.06 radiation 1.0 270 < th dose dependent rect. 23 16
309 199.25 radiation 1.0 270 < th dose independent rect. 23 12
311 199.26 humidity 50.0 270 > th dose independent rect. 5 18
312 199.28 wind 1.0 270 > th dose independent rect. 18 5
314 199.37 atmosphere 995.0 270 > th dose independent rect. 13 15
352 199.70 radiation 30.0 10 < th dose independent rect. 14 16
355 199.73 wind 9.0 270 < th dose dependent rect. 23 6
361 199.80 radiation 1.0 270 < th dose dependent rect. 23 12
383 200.27 wind 1.0 90 > th dose independent rect. 5 10
387 200.33 wind 9.0 10 < th dose independent rect. 6 9
420 201.30 precipitation 0.1 10 < th dose independent rect. 6 9
421 201.30 precipitation 0.1 10 < th dose dependent rect. 6 9
423 201.34 wind 9.0 10 < th dose independent rect. 15 15
424 201.34 temperature 10.0 90 > th dose dependent rect. 15 15
426 201.43 temperature 10.0 10 > th dose independent rect. 6 9
428 201.43 atmosphere 995.0 10 > th dose independent rect. 6 9
429 201.43 atmosphere 1015.0 10 < th dose independent rect. 6 9
430 201.43 temperature 10.0 10 > th dose independent rect. 15 15
458 201.59 radiation 30.0 10 < th dose independent rect. 12 18
476 202.20 atmosphere 995.0 270 > th dose independent rect. 5 18
507 202.66 humidity 50.0 270 > th dose independent rect. 4 20
509 202.68 humidity 50.0 270 > th dose dependent rect. 23 6
522 202.97 radiation 1.0 10 > th dose independent rect. 6 9
525 203.01 radiation 1.0 270 < th dose dependent rect. 5 19
531 203.14 radiation 40.0 90 < th dose dependent rect. 1 17
541 203.53 humidity 50.0 10 > th dose independent rect. 6 9
554 203.62 atmosphere 995.0 90 > th dose independent rect. 15 14
558 203.65 radiation 1.0 270 < th dose independent rect. 5 19
564 203.68 atmosphere 995.0 10 > th dose independent rect. 15 15
581 203.94 atmosphere 1015.0 270 < th dose independent rect. 13 15
604 204.22 precipitation 0.1 10 < th dose independent rect. 15 15
605 204.22 precipitation 0.1 10 < th dose dependent rect. 15 15
608 204.25 radiation 1.0 90 > th dose independent rect. 4 11
655 204.59 temperature 10.0 10 > th dose dependent rect. 15 15
664 204.68 precipitation 0.1 270 < th dose independent rect. 1 2
665 204.68 precipitation 0.1 270 < th dose dependent rect. 1 2
671 204.74 temperature 10.0 270 > th dose independent rect. 1 2
673 204.74 temperature 30.0 270 < th dose independent rect. 1 2
674 204.74 humidity 50.0 270 > th dose independent rect. 1 2
677 204.74 atmosphere 995.0 270 > th dose independent rect. 1 2
678 204.74 atmosphere 1010.0 270 < th dose independent rect. 1 2
680 204.74 radiation 1.0 270 < th dose independent rect. 1 2
685 204.74 temperature 10.0 270 > th dose independent rect. 3 22
686 204.74 radiation 1.0 270 < th dose dependent rect. 1 2
691 204.76 wind 9.0 270 < th dose independent rect. 1 2
698 204.84 atmosphere 995.0 270 > th dose dependent rect. 24 17
699 204.86 temperature 10.0 270 > th dose independent rect. 19 3
700 204.86 temperature 30.0 270 < th dose independent rect. 19 3
701 204.86 humidity 50.0 270 > th dose independent rect. 19 3
702 204.86 atmosphere 995.0 270 > th dose independent rect. 19 3
703 204.86 radiation 1.0 270 < th dose independent rect. 19 3
709 204.86 temperature 10.0 270 > th dose independent rect. 22 21
710 204.86 radiation 1.0 270 < th dose dependent rect. 19 3
719 204.95 temperature 10.0 1440 > th dose independent rect. 7 9
722 204.95 temperature 10.0 1440 > th dose independent rect. 16 15
727 204.99 wind 9.0 270 < th dose independent rect. 19 3
733 205.10 humidity 50.0 270 > th dose dependent rect. 24 4
760 205.46 wind 1.0 10 > th dose independent rect. 6 9
769 205.63 wind 1.0 270 > th dose independent rect. 5 18
790 205.72 atmosphere 995.0 270 > th dose dependent rect. 24 5
792 205.77 precipitation 0.1 270 < th dose independent rect. 22 21
793 205.77 precipitation 0.1 270 < th dose dependent rect. 22 21
818 206.11 wind 9.0 270 < th dose dependent rect. 1 2
830 206.22 wind 9.0 270 < th dose independent rect. 22 21
851 206.57 humidity 70.0 10 > th dose independent rect. 19 7
863 206.72 humidity 50.0 270 > th dose dependent rect. 1 2
900 207.08 radiation 40.0 270 < th dose independent rect. 24 17
902 207.09 atmosphere 1015.0 10 < th dose independent rect. 15 15
907 207.13 humidity 50.0 10 > th dose dependent rect. 19 7
915 207.22 precipitation 0.1 270 < th dose independent rect. 19 3
916 207.22 precipitation 0.1 270 < th dose dependent rect. 19 3
917 207.23 radiation 10.0 10 < th dose independent rect. 2 17
924 207.33 radiation 10.0 10 < th dose independent rect. 24 19
962 207.71 wind 9.0 270 < th dose independent rect. 3 22
966 207.79 humidity 60.0 270 > th dose independent rect. 18 17
981 207.95 humidity 50.0 270 > th dose dependent rect. 19 3
989 208.03 wind 1.0 270 > th dose independent rect. 19 3