BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0585200 Os02g0585200|Os02g0585200
(133 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0585200 Heavy metal transport/detoxification protein d... 164 2e-41
Os02g0585100 Heavy metal transport/detoxification protein d... 95 1e-20
Os02g0584600 82 8e-17
Os02g0584800 Heavy metal transport/detoxification protein d... 68 2e-12
Os02g0584700 Heavy metal transport/detoxification protein d... 68 2e-12
Os02g0582600 Heavy metal transport/detoxification protein d... 66 7e-12
Os04g0464100 Heavy metal transport/detoxification protein d... 65 1e-11
>Os02g0585200 Heavy metal transport/detoxification protein domain containing
protein
Length = 133
Score = 164 bits (414), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/133 (69%), Positives = 92/133 (69%)
Query: 1 MVQKIVIKVHMSSDKCRRKAMALAASTGGVVSVELAGDDRSKVVVVGDVDSIGLTNALRR 60
MVQKIVIKVHMSSDKCRRKAMALAASTGGVVSVELAGDDRSKVVVVGDVDSIGLTNALRR
Sbjct: 1 MVQKIVIKVHMSSDKCRRKAMALAASTGGVVSVELAGDDRSKVVVVGDVDSIGLTNALRR 60
Query: 61 KVDGSAELVEVSDASXXXXXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXXXXXXXXCPC 120
KVDGSAELVEVSDAS L CPC
Sbjct: 61 KVDGSAELVEVSDASKKKEEEAKKKEEKEELVYYHHGYGYYHPGGVYHHHPGYGPHGCPC 120
Query: 121 GCNPSPDSTCSIM 133
GCNPSPDSTCSIM
Sbjct: 121 GCNPSPDSTCSIM 133
>Os02g0585100 Heavy metal transport/detoxification protein domain containing
protein
Length = 170
Score = 95.1 bits (235), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/73 (82%), Positives = 65/73 (89%), Gaps = 1/73 (1%)
Query: 1 MVQKIVIKVHMSSDKCRRKAMALAASTGGVVSVELAGDDRSKVVVVGDVDSIGLTNALRR 60
M QKIVIKVHM SDKCRRKAM+L A+TGGVVSVELAGDDRSKVVVVG+VDS+ LT+ LRR
Sbjct: 62 MAQKIVIKVHMGSDKCRRKAMSLVAATGGVVSVELAGDDRSKVVVVGEVDSVKLTSLLRR 121
Query: 61 KVDGSAELVEVSD 73
KV G AELVEV D
Sbjct: 122 KV-GPAELVEVGD 133
>Os02g0584600
Length = 119
Score = 82.4 bits (202), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/70 (68%), Positives = 56/70 (80%), Gaps = 2/70 (2%)
Query: 3 QKIVIKVHMSSDKCRRKAMALAASTGGVVSVELAGDDRSKVVVVGD-VDSIGLTNALRRK 61
QKIVIK++M+SDKCR KAMAL AST GV SV LAGD + ++VVVGD VDSI LT ALR+K
Sbjct: 4 QKIVIKMNMASDKCRSKAMALVASTTGVDSVALAGDGKDQLVVVGDGVDSIELTTALRKK 63
Query: 62 VDGSAELVEV 71
V G A L+ V
Sbjct: 64 V-GHATLMTV 72
>Os02g0584800 Heavy metal transport/detoxification protein domain containing
protein
Length = 121
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/70 (68%), Positives = 52/70 (74%), Gaps = 2/70 (2%)
Query: 3 QKIVIKVHMSSDKCRRKAMALAASTGGVVSVELAGDDRSK-VVVVGDVDSIGLTNALRRK 61
QKIVIKV MS DKCR KAMAL A+TGGV SV LAGD + + VVV VDSI LT ALR+K
Sbjct: 4 QKIVIKVEMSCDKCRSKAMALVAATGGVDSVALAGDGKDQVVVVGDGVDSIKLTAALRKK 63
Query: 62 VDGSAELVEV 71
V G A LV V
Sbjct: 64 V-GHATLVTV 72
>Os02g0584700 Heavy metal transport/detoxification protein domain containing
protein
Length = 117
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 53/70 (75%), Gaps = 2/70 (2%)
Query: 3 QKIVIKVHMSSDKCRRKAMALAASTGGVVSVELAGDDRSK-VVVVGDVDSIGLTNALRRK 61
QKIVIKV+M+SDKCR KAMAL AST GV SV LAGD + + VVV VDSI LT ALR+K
Sbjct: 4 QKIVIKVNMASDKCRSKAMALVASTSGVDSVALAGDGKDQVVVVGDGVDSIKLTTALRKK 63
Query: 62 VDGSAELVEV 71
V G A L+ V
Sbjct: 64 V-GHATLMTV 72
>Os02g0582600 Heavy metal transport/detoxification protein domain containing
protein
Length = 246
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 54/72 (75%), Gaps = 2/72 (2%)
Query: 1 MVQKIVIKVHMSSDKCRRKAMALAASTGGVVSVELAGDDRSKVVVVGD-VDSIGLTNALR 59
M ++I+I++ + +DKC++KAM AA+ GV SV LAG DR+ ++V+G+ VD+ LT L+
Sbjct: 1 MKKEIIIRISVKTDKCQKKAMKEAATVSGVQSVTLAGGDRNLLLVIGEGVDTNKLTKKLK 60
Query: 60 RKVDGSAELVEV 71
RKV GS E+VE+
Sbjct: 61 RKV-GSGEIVEL 71
>Os04g0464100 Heavy metal transport/detoxification protein domain containing
protein
Length = 118
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 1 MVQKIVIKVHMSSDKCRRKAMALAASTGGVVSVELAGDDRSKVVVVGD-VDSIGLTNALR 59
M QKIVIKV M +K R KAMAL A GV S+E+ GD + ++ VVGD VD + L LR
Sbjct: 1 MQQKIVIKVSMPCEKSRSKAMALVARASGVNSMEVTGDGKDRLQVVGDGVDPVCLVACLR 60
Query: 60 RKVDGSAELVEVSD 73
RK+ G AE+V+V +
Sbjct: 61 RKI-GYAEIVQVEE 73
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.130 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,877,216
Number of extensions: 71924
Number of successful extensions: 315
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 312
Number of HSP's successfully gapped: 8
Length of query: 133
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 43
Effective length of database: 12,336,541
Effective search space: 530471263
Effective search space used: 530471263
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 150 (62.4 bits)