BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0565000 Os02g0565000|AK120665
(419 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0565000 Homeodomain-like containing protein 478 e-135
Os04g0445600 Homeodomain-like containing protein 238 6e-63
Os01g0674000 Homeodomain-like containing protein 120 1e-27
Os05g0560600 Homeodomain-like containing protein 102 4e-22
Os01g0718900 Conserved hypothetical protein 78 1e-14
>Os02g0565000 Homeodomain-like containing protein
Length = 419
Score = 478 bits (1229), Expect = e-135, Method: Compositional matrix adjust.
Identities = 263/405 (64%), Positives = 263/405 (64%)
Query: 1 MDDDGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHLALAIPIPKPXXXXXXXXXXXXR 60
MDDDGGA GHLALAIPIPKP R
Sbjct: 1 MDDDGGASPSSSLSPSRSPSPLPVADPVTVAAAPPGHLALAIPIPKPGSSSGGGGGGGGR 60
Query: 61 EDAWSDGATSTLIDAWGERFVALGRGSLRHPQWQEVAEVVSSRDGYSKQPKSDVQCKNRI 120
EDAWSDGATSTLIDAWGERFVALGRGSLRHPQWQEVAEVVSSRDGYSKQPKSDVQCKNRI
Sbjct: 61 EDAWSDGATSTLIDAWGERFVALGRGSLRHPQWQEVAEVVSSRDGYSKQPKSDVQCKNRI 120
Query: 121 DTLKKKYKVEKAKPDSSWPYFHRLDTLLAPVHKXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
DTLKKKYKVEKAKPDSSWPYFHRLDTLLAPVHK
Sbjct: 121 DTLKKKYKVEKAKPDSSWPYFHRLDTLLAPVHKPAGAYPAAAAAGAAGAGNSGSNSAAAA 180
Query: 181 XXXXXXXXXXXXVNFPQRTRTQFLPSSGVKRRMXXXXXXXXXXXXXDGFPPEPPMAAANG 240
VNFPQRTRTQFLPSSGVKRRM DGFPPEPPMAAANG
Sbjct: 181 TAARSTAPMAPRVNFPQRTRTQFLPSSGVKRRMPSPPQVSASSESSDGFPPEPPMAAANG 240
Query: 241 KRRREVEEEVNGADSGHRTQGLRELAQAIRRFGEVYERVELAKREQXXXXXXXXXXXXXX 300
KRRREVEEEVNGADSGHRTQGLRELAQAIRRFGEVYERVELAKREQ
Sbjct: 241 KRRREVEEEVNGADSGHRTQGLRELAQAIRRFGEVYERVELAKREQELRMERDRLEAARE 300
Query: 301 XXXQRVQFFLKMQMELSKXXXXXXXXXXXXXXXXXXXXXXXDGNGTRRTAMATDVGTSSN 360
QRVQFFLKMQMELSK DGNGTRRTAMATDVGTSSN
Sbjct: 301 LEDQRVQFFLKMQMELSKANNAGASAAAAAVGAVATAIAAADGNGTRRTAMATDVGTSSN 360
Query: 361 HHVRYRFQDSRHCXXXXXXXXXXYNENNAAEAARGTGNGSDTDNK 405
HHVRYRFQDSRHC YNENNAAEAARGTGNGSDTDNK
Sbjct: 361 HHVRYRFQDSRHCHAAPQQPQHQYNENNAAEAARGTGNGSDTDNK 405
>Os04g0445600 Homeodomain-like containing protein
Length = 417
Score = 238 bits (607), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 164/370 (44%), Positives = 180/370 (48%), Gaps = 34/370 (9%)
Query: 36 GHLALAIPIPKPXXXXXXX--XXXXXREDAWSDGATSTLIDAWGERFVALGRGSLRHPQW 93
G LALA+PI K REDAWS+GAT+ LIDAWGERFVALGRGSLRHPQW
Sbjct: 38 GLLALALPIQKQQHAASPNPGGGGGGREDAWSEGATAALIDAWGERFVALGRGSLRHPQW 97
Query: 94 QEVAEVVSSRDGYSKQPKSDVQCKNRIDTLKKKYKVEKAKPDSSWPYFHRLDTLLAPVHK 153
QEVA+ VSSR+GY+K PKSDVQCKNRIDTLKKKYK+E+AKP SSW +F RLD LLAP
Sbjct: 98 QEVADAVSSREGYAKAPKSDVQCKNRIDTLKKKYKIERAKPASSWQFFGRLDDLLAPTFN 157
Query: 154 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNFPQRTRTQFLPS--SGVKR 211
V FPQR+RT +P+ S VKR
Sbjct: 158 -------------QKPGGNGGGGVGASVNGRNPVPAALRVGFPQRSRTPLMPAPVSAVKR 204
Query: 212 RMXXXXXXXXXXXXXDGFPPEPPMA--------AANGKRRREVE-EEVNGADSGHRTQGL 262
R DGFPPE A NGKR R E G R QGL
Sbjct: 205 RA-PSPEPSASSESSDGFPPERQPAFPPLPLPPPPNGKRSRADEGRGGGAGGGGDRAQGL 263
Query: 263 RELAQAIRRFGEVYERVELAKREQXXXXXXXXXXXXXXXXXQRVQFFLKMQMELSKXXXX 322
RELAQAIRRFGE YERVE AK EQ QRVQFFL QMELS+
Sbjct: 264 RELAQAIRRFGEAYERVETAKLEQSAEMERRRLDFASELESQRVQFFLNTQMELSQVKDH 323
Query: 323 XXXXXXXXXXXXXXXXXXXDGNGTRRTAMATDVGTSSNHHVRYRFQDS----RHCXXXXX 378
+RR A D S N+H RYR D H
Sbjct: 324 SSSPANAAAPPGATGGAG---GTSRRMASVNDASASGNYHRRYRVSDGGRHRHHPQPPPS 380
Query: 379 XXXXXYNENN 388
Y+ENN
Sbjct: 381 RPHYQYHENN 390
>Os01g0674000 Homeodomain-like containing protein
Length = 332
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/96 (58%), Positives = 72/96 (75%), Gaps = 4/96 (4%)
Query: 60 REDAWSDGATSTLIDAWGERFVALGRGSLRHPQWQEVAEVVSSRDGYS---KQPKSDVQC 116
RED WSDG T+ L+DAWG R+V L RGSLR PQW+EVAE V++R G S + P++D+QC
Sbjct: 15 REDCWSDGETAALVDAWGRRYVDLNRGSLRQPQWREVAEAVNARPGASARRRPPRTDIQC 74
Query: 117 KNRIDTLKKKYKVEKAK-PDSSWPYFHRLDTLLAPV 151
KNR+DTLKKKYK E+A+ SSW ++ LD L+ P
Sbjct: 75 KNRVDTLKKKYKAERARGTPSSWYFYRDLDMLVGPT 110
>Os05g0560600 Homeodomain-like containing protein
Length = 346
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 66/95 (69%), Gaps = 4/95 (4%)
Query: 60 REDAWSDGATSTLIDAWGERFVALGRGSLRHPQWQEVAEVVSS---RDGYSKQPKSDVQC 116
RED WS+G T L+ AWG R+V L RG+LR QWQEVA+ V+S + P++DVQC
Sbjct: 37 REDCWSEGETEALVRAWGSRYVELNRGNLRQKQWQEVADAVNSRRGAAARRRPPRTDVQC 96
Query: 117 KNRIDTLKKKYKVEKAKP-DSSWPYFHRLDTLLAP 150
KNR+DTLKKKYK E+A+ S+W +F LD L+ P
Sbjct: 97 KNRVDTLKKKYKAERARVMPSTWSFFPELDRLVGP 131
>Os01g0718900 Conserved hypothetical protein
Length = 351
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 14/100 (14%)
Query: 64 WSDGATSTLIDAWGERFVALGRGSLRHPQWQEVAEVVSSRDGYSKQPKSDVQCKNRIDTL 123
WS+G+T L+DAWG+RFV GR SLR +W EV+ + ++ S+ QC+NRIDTL
Sbjct: 99 WSEGSTFALLDAWGDRFVRAGRRSLRADEWLEVSRLAAAAASRPPGYYSEQQCRNRIDTL 158
Query: 124 KKKYKVEKA-------KPD-------SSWPYFHRLDTLLA 149
+KKY+ EK +PD S W YF ++ +L+
Sbjct: 159 RKKYRKEKERMRLAARRPDRPDRPSPSKWIYFDKMQSLMC 198
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.131 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,115,102
Number of extensions: 334435
Number of successful extensions: 1165
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1156
Number of HSP's successfully gapped: 10
Length of query: 419
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 316
Effective length of database: 11,657,759
Effective search space: 3683851844
Effective search space used: 3683851844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)