Os05g0560600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os05g0560600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.93 | 0.244 | 11.9 | 0.196 | 0.577 | -0.378 | -0.185 | 0.302 | 0.0183 | 6.47 | 2.389 | 80 | -- | -- |
| 27.39 | 0.244 | 11.9 | 0.206 | 0.585 | -0.305 | -0.36 | -- | 0.026 | 7.1 | 2.653 | 77 | -- | -- |
| 27.01 | 0.242 | 11.9 | 0.192 | 0.577 | -0.386 | -- | 0.315 | 0.0186 | 6.41 | 2.385 | 80 | -- | -- |
| 27.62 | 0.245 | 11.9 | 0.196 | 0.582 | -0.387 | -- | -- | 0.0195 | 6.4 | 2.52 | 80 | -- | -- |
| 39.27 | 0.293 | 11.9 | 0.198 | -- | -0.436 | -- | 0.395 | 0.0404 | -- | 2.385 | 80 | -- | -- |
| 28.99 | 0.252 | 11.8 | 0.227 | 0.732 | -- | -0.494 | -- | 0.0494 | 8.95 | -- | -- | -- | -- |
| 29.82 | 0.256 | 11.8 | 0.21 | 0.734 | -- | -- | -- | 0.049 | 8.94 | -- | -- | -- | -- |
| 40.2 | 0.297 | 11.9 | 0.202 | -- | -0.435 | -- | -- | 0.0416 | -- | 2.52 | 80 | -- | -- |
| 28.42 | 0.248 | 11.9 | -- | 0.6 | -0.387 | -- | -- | 0.0035 | 6.41 | 0.03987 | 90 | -- | -- |
| 60.66 | 0.364 | 11.9 | 0.21 | -- | -- | -- | -- | 0.0539 | -- | -- | -- | -- | -- |
| 30.99 | 0.26 | 11.9 | -- | 0.734 | -- | -- | -- | 0.0256 | 8.92 | -- | -- | -- | -- |
| 40.93 | 0.299 | 11.9 | -- | -- | -0.434 | -- | -- | 0.00424 | -- | 0.03987 | 90 | -- | -- |
| 61.83 | 0.367 | 11.9 | -- | -- | -- | -- | -- | 0.0306 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.00 | radiation | 10.0 | 30 | < th | dose dependent | sin | 9 | NA |
| 6 | 25.18 | temperature | 30.0 | 90 | < th | dose independent | rect. | 13 | 15 |
| 9 | 25.28 | radiation | 1.0 | 90 | > th | dose independent | sin | 10 | NA |
| 13 | 25.35 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 17 | 15 |
| 17 | 25.43 | radiation | 1.0 | 90 | < th | dose independent | sin | 10 | NA |
| 19 | 25.45 | radiation | 1.0 | 30 | < th | dose independent | sin | 8 | NA |
| 23 | 25.49 | radiation | 1.0 | 90 | > th | dose independent | rect. | 17 | 15 |
| 37 | 25.62 | humidity | 60.0 | 90 | > th | dose independent | rect. | 13 | 15 |
| 53 | 25.67 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 5 | 3 |
| 112 | 25.91 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 21 | 20 |
| 118 | 25.97 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 166 | 26.04 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 7 |
| 208 | 26.12 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 13 | 16 |
| 209 | 26.12 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 21 | 17 |
| 213 | 26.14 | radiation | 1.0 | 30 | < th | dose independent | rect. | 21 | 20 |
| 230 | 26.16 | radiation | 1.0 | 30 | > th | dose independent | rect. | 17 | 20 |
| 231 | 26.16 | radiation | 1.0 | 30 | > th | dose independent | rect. | 17 | 23 |
| 272 | 26.18 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 13 | 15 |
| 291 | 26.24 | temperature | 25.0 | 10 | > th | dose independent | rect. | 9 | 8 |
| 292 | 26.24 | humidity | 90.0 | 10 | < th | dose independent | rect. | 17 | 16 |
| 297 | 26.24 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 312 | 26.27 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 21 |
| 315 | 26.28 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 5 |
| 316 | 26.29 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 21 |
| 317 | 26.30 | humidity | 90.0 | 270 | < th | dose independent | rect. | 8 | 7 |
| 318 | 26.30 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 7 |
| 319 | 26.30 | wind | 7.0 | 270 | < th | dose independent | rect. | 23 | 15 |
| 322 | 26.30 | radiation | 1.0 | 30 | < th | dose independent | rect. | 21 | 17 |
| 327 | 26.30 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 21 | 15 |
| 336 | 26.32 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 14 | 9 |
| 337 | 26.33 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 5 |
| 339 | 26.33 | radiation | 1.0 | 10 | < th | dose independent | rect. | 1 | 16 |
| 344 | 26.34 | wind | 5.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 346 | 26.34 | temperature | 15.0 | 270 | > th | dose independent | rect. | 23 | 15 |
| 349 | 26.34 | humidity | 50.0 | 270 | > th | dose independent | rect. | 9 | 18 |
| 351 | 26.34 | temperature | 30.0 | 10 | < th | dose independent | rect. | 10 | 19 |
| 358 | 26.36 | wind | 1.0 | 270 | > th | dose independent | rect. | 14 | 9 |
| 370 | 26.38 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 21 |
| 372 | 26.38 | radiation | 1.0 | 90 | < th | dose independent | rect. | 19 | 22 |
| 375 | 26.39 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 9 | 20 |
| 379 | 26.39 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 17 | 8 |
| 385 | 26.40 | wind | 7.0 | 90 | < th | dose independent | rect. | 9 | 20 |
| 396 | 26.41 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 9 |
| 405 | 26.42 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 3 |
| 407 | 26.42 | temperature | 25.0 | 270 | < th | dose independent | rect. | 3 | 8 |
| 413 | 26.42 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 422 | 26.43 | wind | 9.0 | 270 | < th | dose independent | rect. | 9 | 18 |
| 427 | 26.44 | radiation | 1.0 | 30 | < th | dose independent | rect. | 21 | 15 |
| 432 | 26.44 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 21 |
| 433 | 26.44 | wind | 9.0 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 442 | 26.45 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 20 | 23 |
| 444 | 26.46 | radiation | 1.0 | 30 | < th | dose independent | rect. | 21 | 11 |
| 451 | 26.46 | temperature | 15.0 | 90 | > th | dose independent | rect. | 9 | 20 |
| 452 | 26.46 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 5 | 20 |
| 453 | 26.46 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 23 |
| 458 | 26.47 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 9 | 8 |
| 461 | 26.47 | radiation | 1.0 | 10 | < th | dose independent | rect. | 1 | 13 |
| 485 | 26.49 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 487 | 26.49 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 488 | 26.49 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 490 | 26.49 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 491 | 26.49 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 492 | 26.49 | radiation | 30.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 494 | 26.49 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 6 |
| 506 | 26.49 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 6 |
| 541 | 26.51 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 17 | 16 |
| 542 | 26.51 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 1 | 16 |
| 557 | 26.52 | radiation | 1.0 | 10 | > th | dose dependent | sin | 11 | NA |
| 559 | 26.52 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 8 |
| 607 | 26.55 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 9 | 20 |
| 613 | 26.56 | humidity | 90.0 | 10 | < th | dose independent | rect. | 6 | 3 |
| 620 | 26.56 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 1 | 16 |
| 624 | 26.56 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 630 | 26.56 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 23 | 18 |
| 641 | 26.57 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 17 | 11 |
| 657 | 26.59 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 9 | 8 |
| 658 | 26.59 | radiation | 1.0 | 10 | < th | dose independent | rect. | 1 | 11 |
| 662 | 26.59 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 1 | 13 |
| 677 | 26.60 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 7 |
| 686 | 26.61 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 11 | 17 |
| 691 | 26.61 | wind | 7.0 | 10 | < th | dose dependent | rect. | 21 | 8 |
| 701 | 26.62 | wind | 7.0 | 270 | < th | dose independent | rect. | 3 | 6 |
| 709 | 26.62 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 9 |
| 717 | 26.62 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 3 |
| 720 | 26.62 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 9 |
| 737 | 26.63 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 6 |
| 740 | 26.63 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 6 |
| 741 | 26.63 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 6 |
| 742 | 26.63 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 6 |
| 743 | 26.63 | radiation | 1.0 | 10 | < th | dose independent | rect. | 1 | 7 |
| 775 | 26.64 | humidity | 60.0 | 10 | > th | dose independent | rect. | 5 | 8 |
| 777 | 26.64 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 9 |
| 779 | 26.64 | radiation | 1.0 | 30 | < th | dose independent | rect. | 21 | 9 |
| 788 | 26.64 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 15 |
| 789 | 26.64 | radiation | 1.0 | 90 | < th | dose independent | rect. | 23 | 17 |
| 815 | 26.65 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 14 |
| 825 | 26.66 | temperature | 15.0 | 90 | > th | dose independent | rect. | 9 | 8 |
| 829 | 26.66 | radiation | 1.0 | 270 | < th | dose independent | rect. | 17 | 11 |
| 850 | 26.67 | wind | 9.0 | 10 | < th | dose independent | rect. | 9 | 8 |
| 866 | 26.67 | wind | 9.0 | 270 | < th | dose dependent | rect. | 18 | 10 |
| 867 | 26.67 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 21 | 11 |
| 886 | 26.68 | wind | 7.0 | 90 | < th | dose independent | rect. | 11 | 17 |
| 901 | 26.68 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 13 | 16 |
| 917 | 26.69 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 16 |
| 925 | 26.69 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 5 | 4 |
| 936 | 26.70 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 5 |
| 941 | 26.70 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 5 | 8 |
| 960 | 26.70 | wind | 9.0 | 270 | < th | dose dependent | rect. | 8 | 20 |
| 978 | 26.71 | wind | 1.0 | 90 | > th | dose independent | rect. | 9 | 8 |
| 996 | 26.72 | radiation | 1.0 | 10 | < th | dose independent | rect. | 1 | 5 |
| 998 | 26.72 | wind | 1.0 | 10 | > th | dose independent | rect. | 9 | 8 |
| 999 | 26.72 | wind | 7.0 | 270 | < th | dose independent | rect. | 18 | 10 |
| 1000 | 26.72 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 10 |