BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0560600 Os05g0560600|AK122091
(346 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0560600 Homeodomain-like containing protein 460 e-130
Os01g0674000 Homeodomain-like containing protein 144 8e-35
Os04g0445600 Homeodomain-like containing protein 115 5e-26
Os02g0565000 Homeodomain-like containing protein 86 4e-17
>Os05g0560600 Homeodomain-like containing protein
Length = 346
Score = 460 bits (1183), Expect = e-130, Method: Compositional matrix adjust.
Identities = 240/346 (69%), Positives = 240/346 (69%)
Query: 1 MEVREMAVXXXXXXXXXXXXXXXXLRMPPPNPNLPYREDCWSEGETEALVRAWGSRYVEL 60
MEVREMAV LRMPPPNPNLPYREDCWSEGETEALVRAWGSRYVEL
Sbjct: 1 MEVREMAVAAAAAAAASSGGGGGGLRMPPPNPNLPYREDCWSEGETEALVRAWGSRYVEL 60
Query: 61 NRGNLRQKQWQEVADAVNSXXXXXXXXXXXXTDVQCKNRVDTLKKKYKAERARVMPSTWS 120
NRGNLRQKQWQEVADAVNS TDVQCKNRVDTLKKKYKAERARVMPSTWS
Sbjct: 61 NRGNLRQKQWQEVADAVNSRRGAAARRRPPRTDVQCKNRVDTLKKKYKAERARVMPSTWS 120
Query: 121 FFPELDRLVGPTLXXXXXXXXXXXXXXXXXXXYFAMPIHPSAVRKXXXXXXXXXXXXXXX 180
FFPELDRLVGPTL YFAMPIHPSAVRK
Sbjct: 121 FFPELDRLVGPTLSASASKRPSPSPSPVPPPPYFAMPIHPSAVRKPPSPSPSPSPPPPMA 180
Query: 181 XXXXXYRRGSPLPXXXXXXXXXXXXXXXXVSDSEDSEGPGDNNNHXXXXXXXXXXXXXXX 240
YRRGSPLP VSDSEDSEGPGDNNNH
Sbjct: 181 LPLPSYRRGSPLPAAALIQQEAAAAAAAAVSDSEDSEGPGDNNNHNAQRSPSQSVSSRSG 240
Query: 241 XXXXXXXXEVDGGFRELARAIEAFAEMYERVESAKQKQALEIERQRIDFLKQLEVKRMEN 300
EVDGGFRELARAIEAFAEMYERVESAKQKQALEIERQRIDFLKQLEVKRMEN
Sbjct: 241 NSNKRSRQEVDGGFRELARAIEAFAEMYERVESAKQKQALEIERQRIDFLKQLEVKRMEN 300
Query: 301 FVDAHVKLARAKRIKKHAGTAPDGIGAAELVSSVAALPFLSTSTYI 346
FVDAHVKLARAKRIKKHAGTAPDGIGAAELVSSVAALPFLSTSTYI
Sbjct: 301 FVDAHVKLARAKRIKKHAGTAPDGIGAAELVSSVAALPFLSTSTYI 346
>Os01g0674000 Homeodomain-like containing protein
Length = 332
Score = 144 bits (363), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 67/98 (68%), Positives = 77/98 (78%)
Query: 36 YREDCWSEGETEALVRAWGSRYVELNRGNLRQKQWQEVADAVNSXXXXXXXXXXXXTDVQ 95
YREDCWS+GET ALV AWG RYV+LNRG+LRQ QW+EVA+AVN+ TD+Q
Sbjct: 14 YREDCWSDGETAALVDAWGRRYVDLNRGSLRQPQWREVAEAVNARPGASARRRPPRTDIQ 73
Query: 96 CKNRVDTLKKKYKAERARVMPSTWSFFPELDRLVGPTL 133
CKNRVDTLKKKYKAERAR PS+W F+ +LD LVGPTL
Sbjct: 74 CKNRVDTLKKKYKAERARGTPSSWYFYRDLDMLVGPTL 111
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 68/91 (74%), Gaps = 7/91 (7%)
Query: 256 ELARAIEAFAEMYERVESAKQKQALEIERQRIDFLKQLEVKRMENFVDAHVKLARAKRIK 315
ELARA+E FAEMYER+E AKQ+ A E+ERQRI FLK LE+KRM+ FVD ++LA+AK
Sbjct: 249 ELARAVETFAEMYERMEFAKQRHAEEMERQRIKFLKDLELKRMQAFVDVQLQLAKAKH-- 306
Query: 316 KHAGTAPDGIGAAELVSSVAALPFLSTSTYI 346
G PD GA E++ S+AALPFLST Y+
Sbjct: 307 ---GKHPD--GATEMLMSLAALPFLSTPAYL 332
>Os04g0445600 Homeodomain-like containing protein
Length = 417
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/106 (55%), Positives = 68/106 (64%), Gaps = 4/106 (3%)
Query: 28 PPPNPNLPYREDCWSEGETEALVRAWGSRYVELNRGNLRQKQWQEVADAVNSXXXXXXXX 87
P P RED WSEG T AL+ AWG R+V L RG+LR QWQEVADAV+S
Sbjct: 55 PNPGGGGGGREDAWSEGATAALIDAWGERFVALGRGSLRHPQWQEVADAVSS---REGYA 111
Query: 88 XXXXTDVQCKNRVDTLKKKYKAERARVMPSTWSFFPELDRLVGPTL 133
+DVQCKNR+DTLKKKYK ERA+ S+W FF LD L+ PT
Sbjct: 112 KAPKSDVQCKNRIDTLKKKYKIERAKPA-SSWQFFGRLDDLLAPTF 156
>Os02g0565000 Homeodomain-like containing protein
Length = 419
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 60/95 (63%), Gaps = 4/95 (4%)
Query: 37 REDCWSEGETEALVRAWGSRYVELNRGNLRQKQWQEVADAVNSXXXXXXXXXXXXTDVQC 96
RED WS+G T L+ AWG R+V L RG+LR QWQEVA+ V+S +DVQC
Sbjct: 60 REDAWSDGATSTLIDAWGERFVALGRGSLRHPQWQEVAEVVSS---RDGYSKQPKSDVQC 116
Query: 97 KNRVDTLKKKYKAERARVMPSTWSFFPELDRLVGP 131
KNR+DTLKKKYK E S+W +F LD L+ P
Sbjct: 117 KNRIDTLKKKYKVE-KAKPDSSWPYFHRLDTLLAP 150
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.131 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,308,883
Number of extensions: 255159
Number of successful extensions: 603
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 594
Number of HSP's successfully gapped: 8
Length of query: 346
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 244
Effective length of database: 11,709,973
Effective search space: 2857233412
Effective search space used: 2857233412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)