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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0445600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Homeodomain-like containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.48 (0.037) R2 : 0.491
β1 : 2.82 (0.136) R2dD : 0.502 R2D : 0.429
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.509 (0.0791) R2dN8 : 0.062 R2N8 : -0.0111
σ : 0.695
deviance : 221.51
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
200.19 0.665 5.38 2.85 0.0939 -0.608 -0.0788 -9.53 0.612 6.52 7.198 702 -- --
207.35 0.671 5.46 3.04 0.22 1.32 -0.242 -- 0.54 3.76 7.101 65 -- --
200.21 0.659 5.38 2.84 0.0933 -0.616 -- -9.52 0.612 6.24 7.192 701 -- --
207.41 0.671 5.46 3.02 0.18 1.33 -- -- 0.565 3.61 7.168 110 -- --
200.63 0.66 5.38 2.84 -- -0.734 -- -9.93 0.611 -- 7.217 701 -- --
220.69 0.696 5.48 2.81 0.0144 -- 0.509 -- 0.51 8.33 -- -- -- --
221.42 0.697 5.48 2.82 0.0408 -- -- -- 0.508 3.98 -- -- -- --
209.12 0.674 5.46 3.02 -- 1.32 -- -- 0.565 -- 7.2 106 -- --
431.31 0.967 5.55 -- 0.11 0.189 -- -- 0.191 3.8 9.413 31 -- --
221.51 0.695 5.48 2.82 -- -- -- -- 0.509 -- -- -- -- --
431.46 0.972 5.55 -- 0.0962 -- -- -- 0.194 3.56 -- -- -- --
431.56 0.968 5.55 -- -- 0.406 -- -- 0.206 -- 9.845 37 -- --
431.98 0.97 5.55 -- -- -- -- -- 0.196 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 194.69 precipitation 0.1 4320 > th dose dependent rect. 13 5
2 195.12 wind 9.0 43200 > th dose independent rect. 16 5
3 195.33 wind 9.0 43200 > th dose independent rect. 17 3
5 196.01 wind 9.0 43200 < th dose independent rect. 16 5
6 196.05 wind 9.0 43200 > th dose independent rect. 18 12
7 196.32 wind 9.0 43200 > th dose dependent rect. 18 12
10 196.51 wind 9.0 43200 > th dose dependent rect. 14 7
15 196.81 wind 9.0 43200 < th dose independent rect. 18 12
17 196.85 wind 9.0 43200 > th dose independent rect. 14 7
23 197.00 wind 9.0 43200 < th dose independent rect. 14 7
31 197.31 wind 7.0 43200 > th dose dependent rect. 19 1
38 197.50 temperature 30.0 4320 < th dose independent rect. 3 7
43 197.60 temperature 30.0 4320 < th dose independent rect. 8 2
47 197.64 temperature 30.0 4320 < th dose independent rect. 23 11
51 197.66 temperature 30.0 4320 < th dose independent rect. 19 15
65 197.94 temperature 30.0 4320 > th dose independent rect. 8 2
80 197.95 precipitation 0.1 4320 > th dose dependent rect. 6 12
83 197.97 wind 9.0 43200 > th dose dependent rect. 17 3
86 198.12 wind 7.0 43200 > th dose dependent rect. 17 5
90 198.21 wind 9.0 43200 > th dose dependent rect. 16 7
99 198.44 temperature 25.0 4320 > th dose dependent rect. 7 1
128 198.54 wind 5.0 4320 > th dose independent rect. 20 1
129 198.54 wind 5.0 4320 < th dose independent rect. 20 1
138 198.57 radiation 10.0 4320 < th dose dependent rect. 19 10
158 198.68 wind 7.0 43200 > th dose independent rect. 19 1
173 198.78 wind 7.0 720 < th dose independent rect. 2 17
193 198.92 wind 7.0 1440 > th dose dependent rect. 16 1
196 198.96 wind 9.0 4320 > th dose independent rect. 17 4
200 199.01 temperature 30.0 4320 > th dose independent rect. 11 1
207 199.05 temperature 25.0 270 > th dose dependent sin 9 NA
210 199.11 wind 7.0 720 > th dose independent rect. 9 11
211 199.11 wind 7.0 720 > th dose independent rect. 7 13
225 199.22 wind 7.0 43200 < th dose independent rect. 17 1
251 199.29 humidity 80.0 1440 < th dose independent rect. 7 2
261 199.33 radiation 1.0 1440 < th dose dependent rect. 17 1
268 199.41 temperature 30.0 4320 < th dose independent rect. 11 1
269 199.42 wind 7.0 43200 > th dose independent rect. 17 1
270 199.43 wind 9.0 43200 < th dose independent rect. 14 11
279 199.48 wind 9.0 4320 > th dose dependent rect. 17 4
300 199.55 wind 7.0 720 < th dose independent rect. 7 16
305 199.58 wind 9.0 43200 > th dose independent rect. 14 11
310 199.61 temperature 30.0 4320 > th dose independent sin 9 NA
336 199.66 temperature 30.0 1440 < th dose dependent rect. 18 1
341 199.68 temperature 30.0 4320 < th dose independent sin 9 NA
356 199.68 temperature 25.0 270 > th dose dependent rect. 17 20
361 199.71 radiation 1.0 1440 < th dose independent rect. 17 1
382 199.74 wind 9.0 43200 > th dose dependent rect. 14 11
384 199.75 wind 7.0 720 < th dose independent rect. 11 8
387 199.76 wind 7.0 720 > th dose independent sin 22 NA
411 199.83 humidity 80.0 1440 > th dose independent rect. 7 2
443 199.88 wind 7.0 720 > th dose independent rect. 14 22
446 199.89 temperature 30.0 4320 > th dose dependent rect. 11 1
450 199.91 wind 9.0 4320 > th dose independent rect. 17 2
461 199.95 wind 5.0 43200 < th dose independent rect. 20 1
483 199.96 temperature 30.0 270 < th dose dependent rect. 17 14
540 200.02 wind 7.0 720 > th dose dependent rect. 9 10
568 200.06 temperature 30.0 4320 > th dose independent rect. 16 1
589 200.10 temperature 30.0 4320 < th dose independent rect. 16 1
597 200.11 temperature 30.0 4320 > th dose dependent sin 8 NA
608 200.14 wind 9.0 4320 < th dose independent rect. 17 4
619 200.17 wind 7.0 720 < th dose independent sin 22 NA
663 200.26 temperature 15.0 4320 > th dose dependent rect. 18 1
673 200.29 wind 7.0 1440 > th dose independent rect. 15 2
707 200.34 radiation 1.0 1440 > th dose independent rect. 17 1
710 200.34 radiation 10.0 4320 < th dose dependent rect. 23 6
718 200.35 wind 7.0 720 > th dose dependent rect. 9 8
720 200.35 wind 9.0 43200 > th dose dependent rect. 14 16
722 200.36 precipitation 0.1 4320 > th dose independent rect. 13 5
741 200.39 humidity 80.0 1440 > th dose independent rect. 2 7
744 200.39 wind 7.0 720 > th dose dependent sin 23 NA
757 200.41 wind 7.0 720 > th dose dependent rect. 18 23
765 200.43 radiation 1.0 1440 < th dose dependent rect. 8 10
771 200.44 temperature 25.0 270 > th dose dependent rect. 17 18
775 200.45 wind 1.0 4320 < th dose independent rect. 4 2
780 200.46 precipitation 0.1 4320 < th dose independent rect. 13 5
787 200.46 precipitation 0.1 4320 < th dose dependent rect. 13 5
793 200.47 wind 7.0 720 < th dose independent rect. 1 23
813 200.50 radiation 1.0 1440 < th dose dependent rect. 14 4
817 200.51 wind 7.0 1440 > th dose independent rect. 14 5
827 200.53 wind 7.0 720 < th dose independent rect. 7 12
838 200.55 radiation 1.0 1440 < th dose dependent rect. 11 7
839 200.56 atmosphere 1000.0 1440 < th dose independent rect. 8 3
860 200.58 humidity 80.0 1440 > th dose independent rect. 24 9
871 200.59 wind 7.0 720 > th dose dependent rect. 14 23
880 200.62 wind 7.0 1440 < th dose independent rect. 14 3
884 200.62 wind 7.0 720 > th dose independent rect. 9 23
887 200.63 wind 7.0 720 > th dose independent no NA NA
921 200.67 wind 7.0 720 > th dose independent rect. 18 23
922 200.67 wind 7.0 43200 > th dose dependent rect. 17 1
968 200.74 temperature 30.0 4320 > th dose independent rect. 8 9
983 200.74 temperature 20.0 270 < th dose dependent rect. 21 10