BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0445600 Os04g0445600|Os04g0445600
(417 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G14180.1 | chr3:4707290-4708621 REVERSE LENGTH=444 124 7e-29
AT3G58630.1 | chr3:21683928-21685771 REVERSE LENGTH=322 113 2e-25
AT3G11100.1 | chr3:3476490-3477320 REVERSE LENGTH=250 112 3e-25
AT5G05550.2 | chr5:1639529-1640550 REVERSE LENGTH=250 100 2e-21
AT1G54060.1 | chr1:20180972-20182123 FORWARD LENGTH=384 87 2e-17
AT3G54390.1 | chr3:20137912-20138863 REVERSE LENGTH=297 85 9e-17
AT3G10030.1 | chr3:3092277-3094831 REVERSE LENGTH=543 82 4e-16
AT3G24490.1 | chr3:8911022-8912023 FORWARD LENGTH=334 77 2e-14
AT3G24860.1 | chr3:9073642-9074574 FORWARD LENGTH=311 68 8e-12
AT2G44730.1 | chr2:18437447-18438565 REVERSE LENGTH=373 64 2e-10
>AT3G14180.1 | chr3:4707290-4708621 REVERSE LENGTH=444
Length = 443
Score = 124 bits (312), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 58/97 (59%), Positives = 71/97 (73%), Gaps = 5/97 (5%)
Query: 64 REDAWSEGATAALIDAWGERFVALGRGSLRHPQWQEVADAVSSREGYAKAPKSDVQCKNR 123
RED WSE ATA LIDAWGER++ L RG+L+ W+EVA+ VSSRE Y K PK+D+QCKNR
Sbjct: 80 REDCWSEAATAVLIDAWGERYLELSRGNLKQKHWKEVAEIVSSREDYGKIPKTDIQCKNR 139
Query: 124 IDTLKKKYKIERAKPA-----SSWQFFGRLDDLLAPT 155
IDT+KKKYK E+ + A S W FF +LD L+ T
Sbjct: 140 IDTVKKKYKQEKVRIANGGGRSRWVFFDKLDRLIGST 176
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 46/58 (79%)
Query: 264 RELAQAIRRFGEAYERVETAKLEQSAEMERRRLDFASELESQRVQFFLNTQMELSQVK 321
REL +AI RFGEAYE+ E AKL+Q EME+ R+ F ELE QR+QFF+ TQ+E+SQ+K
Sbjct: 351 RELTRAIMRFGEAYEQTENAKLQQVVEMEKERMKFLKELELQRMQFFVKTQLEISQLK 408
>AT3G58630.1 | chr3:21683928-21685771 REVERSE LENGTH=322
Length = 321
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 82/161 (50%), Gaps = 21/161 (13%)
Query: 53 ASPNPXXXXXXREDAWSEGATAALIDAWGERFVALGRGSLRHPQWQEVADAVSSRE---- 108
S P RED WSE AT LI AWG R+V L RG+LR WQEVA+AV+ R
Sbjct: 11 GSSRPSPATLSREDCWSEEATFTLIQAWGNRYVDLSRGNLRQKHWQEVANAVNDRHYNTG 70
Query: 109 -----GYAKAPKSDVQCKNRIDTLKKKYKIERAKPASS--------WQFFGRLDDLLAPT 155
++ ++DVQCKNRIDTLKKKYK+E+A+ + S W FF LDDLL +
Sbjct: 71 RNVSAAKSQPYRTDVQCKNRIDTLKKKYKVEKARVSESNPGAYISPWPFFSALDDLLRES 130
Query: 156 F----NQKPXXXXXXXXXXXXXXRNPVPAALRVGFPQRSRT 192
F N NPVP A R P+R T
Sbjct: 131 FPTSSNPDSTDNIPHQRLSLPMSINPVPVAPRSAIPRRPAT 171
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 264 RELAQAIRRFGEAYERVETAKLEQSAEMERRRLDFASELESQRVQFFLNTQMELSQVK 321
+E+A AI R G+ YERVE K ++ E+E++R+ FA ELE R+Q F Q+ L +++
Sbjct: 237 KEVADAIERLGQIYERVEEKKRKEMVELEKQRMRFAKELECHRMQLFTEMQVRLHKLR 294
>AT3G11100.1 | chr3:3476490-3477320 REVERSE LENGTH=250
Length = 249
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/95 (64%), Positives = 73/95 (76%), Gaps = 1/95 (1%)
Query: 64 REDAWSEGATAALIDAWGERFVALGRGSLRHPQWQEVADAVSSREGYAKAPKSDVQCKNR 123
RED WSE ATA LI+AWG+R+V L RG+LR W+EVADAV+S G + PK+DVQCKNR
Sbjct: 18 REDWWSEDATATLIEAWGDRYVNLNRGNLRQNDWKEVADAVNSSHGNGR-PKTDVQCKNR 76
Query: 124 IDTLKKKYKIERAKPASSWQFFGRLDDLLAPTFNQ 158
IDTLKKKYK E+AKP S+W FF RLD L+ P +
Sbjct: 77 IDTLKKKYKTEKAKPLSNWCFFDRLDFLIGPVMKK 111
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 40/59 (67%)
Query: 263 LRELAQAIRRFGEAYERVETAKLEQSAEMERRRLDFASELESQRVQFFLNTQMELSQVK 321
RELA++I + GEA+ER+E K + E+E++R++ A ELE QR+ + Q+EL + K
Sbjct: 179 FRELARSILKLGEAFERIEGKKQQMMIELEKQRMEVAKELELQRMNMLMEMQLELEKSK 237
>AT5G05550.2 | chr5:1639529-1640550 REVERSE LENGTH=250
Length = 249
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 71/96 (73%), Gaps = 1/96 (1%)
Query: 64 REDAWSEGATAALIDAWGERFVALGRGSLRHPQWQEVADAVSSREGYAKAPKSDVQCKNR 123
RED WSE ATA L++AWG R+V L G+LR W++VADAV+SR G K+D+QCKNR
Sbjct: 20 REDWWSEEATATLVEAWGNRYVKLNHGNLRQNDWKDVADAVNSRHGDNSRKKTDLQCKNR 79
Query: 124 IDTLKKKYKIERAKPA-SSWQFFGRLDDLLAPTFNQ 158
+DTLKKKYK E+AK + S+W+F+ RLD L+ P +
Sbjct: 80 VDTLKKKYKTEKAKLSPSTWRFYNRLDVLIGPVVKK 115
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%)
Query: 263 LRELAQAIRRFGEAYERVETAKLEQSAEMERRRLDFASELESQRVQFFLNTQMELSQVK 321
RELA AI +FGE YER+E K + E+E++R++ E+E +R+ + Q+E+ + K
Sbjct: 176 CRELATAILKFGEVYERIEGKKQQMMIELEKQRMEVTKEVELKRMNMLMEMQLEIEKSK 234
>AT1G54060.1 | chr1:20180972-20182123 FORWARD LENGTH=384
Length = 383
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 62/97 (63%), Gaps = 6/97 (6%)
Query: 64 REDAWSEGATAALIDAWGERFVALGRGSLRHPQWQEVADAVSSREGYAKAPKSDVQCKNR 123
R+D WSE AT LI+AWG+RF G+G+L+ W+EVA+ V ++ K PK+D+QCKNR
Sbjct: 90 RDDCWSEEATKVLIEAWGDRFSEPGKGTLKQQHWKEVAEIV-NKSRQCKYPKTDIQCKNR 148
Query: 124 IDTL-----KKKYKIERAKPASSWQFFGRLDDLLAPT 155
IDT+ ++K KI S W FF +L+ L+ T
Sbjct: 149 IDTVKKKYKQEKAKIASGDGPSKWVFFKKLESLIGGT 185
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 41/53 (77%), Gaps = 1/53 (1%)
Query: 267 AQAIRRFGEAYERVETAKLEQSAEMERRRLDFASELESQRVQFFLNTQMELSQ 319
A+AI F EAYE+ ETAKL+ AE+E+ R+ FA E+E QR+Q FL TQ+E++Q
Sbjct: 298 ARAILGFTEAYEKAETAKLKLMAELEKERMKFAKEMELQRMQ-FLKTQLEITQ 349
>AT3G54390.1 | chr3:20137912-20138863 REVERSE LENGTH=297
Length = 296
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Query: 64 REDAWSEGATAALIDAWGERFVALGRGSLRHPQWQEVADAVSSREGYAKAPKSDVQCKNR 123
+ D WSEGA + L++A+ ++V R L+ W++VA VSSR + K+PK+ QCKN+
Sbjct: 34 KRDEWSEGAVSTLLEAYESKWVLRNRAKLKGQDWEDVAKHVSSRATHTKSPKTQTQCKNK 93
Query: 124 IDTLKKKYKIERAKP-ASSWQFFGRLDDLLAPT 155
I+++KK+Y+ E A SSW + RLD LL T
Sbjct: 94 IESMKKRYRSESATADGSSWPLYPRLDHLLRGT 126
>AT3G10030.1 | chr3:3092277-3094831 REVERSE LENGTH=543
Length = 542
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 60/98 (61%), Gaps = 8/98 (8%)
Query: 68 WSEGATAALIDAWGERFVALGRGSLRHPQWQEVADAVSSREGYAKAPKSDVQCKNRIDTL 127
WS+ A A L+DA+ ++F L RG+LR W+EVA +VS R K KS QCKN+ID L
Sbjct: 161 WSDAAIACLLDAYSDKFTQLNRGNLRGRDWEEVASSVSER--CEKLSKSVEQCKNKIDNL 218
Query: 128 KKKYKIER------AKPASSWQFFGRLDDLLAPTFNQK 159
KK+YK+ER AS W +F +++D++ + K
Sbjct: 219 KKRYKLERHRMSSGGTAASHWPWFKKMEDIVGNSLALK 256
>AT3G24490.1 | chr3:8911022-8912023 FORWARD LENGTH=334
Length = 333
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 54/94 (57%), Gaps = 9/94 (9%)
Query: 68 WSEGATAALIDAWGERFVALGRGSLRHPQWQEVADAVSSREGYAKAPKSDVQCKNRIDTL 127
W E L++ WG+RF+ LGR SLR+ W EVA+ VS + KS+ QC+ ID L
Sbjct: 90 WREQEAFVLLEVWGDRFLQLGRRSLRNEDWNEVAEKVSEE---LRMEKSETQCRRMIDDL 146
Query: 128 KKKYKIERAK------PASSWQFFGRLDDLLAPT 155
K+KY+ E+ K +S W FF +LD LL +
Sbjct: 147 KRKYRKEKIKVEKSGLGSSKWSFFNKLDMLLCVS 180
>AT3G24860.1 | chr3:9073642-9074574 FORWARD LENGTH=311
Length = 310
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 56/86 (65%), Gaps = 5/86 (5%)
Query: 68 WSEGATAALIDAWGERFVALGRGSLRHPQWQEVADAVSSREGYAKAPKSDVQCKNRIDTL 127
W++ T LI+++ E++ A+GRG L+ W+E+A A SSR G ++ QC+++I+ +
Sbjct: 65 WTQDETLLLIESYKEKWFAIGRGPLKSTHWEEIAVAASSRSG---VERTSTQCRHKIEKM 121
Query: 128 KKKYKIERAK--PASSWQFFGRLDDL 151
+K+++ ER P S W F+ ++++L
Sbjct: 122 RKRFRSERQSMGPISIWPFYNQMEEL 147
>AT2G44730.1 | chr2:18437447-18438565 REVERSE LENGTH=373
Length = 372
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 56/93 (60%), Gaps = 8/93 (8%)
Query: 67 AWSEGATAALIDAWGERFVALGRGSLRHPQWQEVADAVSSREGYAKAPKSDVQCKNRIDT 126
WS T ALIDA+ +++ AL RG+L+ W+EVA+AV + K+ VQC+++++
Sbjct: 63 CWSLEETIALIDAYRDKWYALNRGNLKANHWEEVAEAVGANCPDVILKKTAVQCRHKMEK 122
Query: 127 LKKKYKIE----RAKPA----SSWQFFGRLDDL 151
L+K+Y+ E R+ P SSW F R++ +
Sbjct: 123 LRKRYRTEIQRARSVPVARFISSWVHFKRMEAM 155
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.130 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,708,990
Number of extensions: 144337
Number of successful extensions: 370
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 16
Length of query: 417
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 316
Effective length of database: 8,337,553
Effective search space: 2634666748
Effective search space used: 2634666748
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)