Os02g0565000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os02g0565000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.59 | 0.324 | 12.7 | 0.916 | 0.891 | -1.16 | -1.13 | -1.58 | 0.121 | 13.2 | 26.32 | 99 | -- | -- |
| 50.44 | 0.333 | 12.7 | 0.669 | 0.807 | -1.27 | -0.726 | -- | 0.116 | 13.3 | 41.81 | 96 | -- | -- |
| 51.42 | 0.334 | 12.7 | 0.727 | 0.93 | -1.08 | -- | -0.616 | 0.0756 | 13.3 | 26.03 | 107 | -- | -- |
| 51.82 | 0.337 | 12.7 | 0.652 | 0.879 | -1.01 | -- | -- | 0.0708 | 13.7 | 27 | 93 | -- | -- |
| 80.61 | 0.418 | 12.8 | 0.469 | -- | -2.19 | -- | -0.191 | -0.0203 | -- | 41.26 | 6 | -- | -- |
| 65.67 | 0.38 | 12.7 | 0.906 | 1.17 | -- | -0.518 | -- | 0.294 | 13.7 | -- | -- | -- | -- |
| 66.69 | 0.382 | 12.7 | 0.89 | 1.17 | -- | -- | -- | 0.291 | 13.8 | -- | -- | -- | -- |
| 80.64 | 0.418 | 12.8 | 0.443 | -- | -2.19 | -- | -- | -0.0275 | -- | 57.11 | 6 | -- | -- |
| 61.67 | 0.366 | 12.8 | -- | 0.823 | -1.19 | -- | -- | -0.052 | 13.6 | 27.15 | 71 | -- | -- |
| 149.6 | 0.572 | 12.7 | 0.842 | -- | -- | -- | -- | 0.265 | -- | -- | -- | -- | -- |
| 87.55 | 0.438 | 12.7 | -- | 1.15 | -- | -- | -- | 0.192 | 13.7 | -- | -- | -- | -- |
| 85.04 | 0.43 | 12.8 | -- | -- | -1.9 | -- | -- | -0.142 | -- | 29.73 | 11 | -- | -- |
| 168.3 | 0.606 | 12.7 | -- | -- | -- | -- | -- | 0.172 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.27 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 5 | 40.81 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 15 |
| 11 | 41.18 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 21 |
| 16 | 41.60 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 20 |
| 25 | 42.18 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 17 |
| 72 | 43.51 | temperature | 25 | 270 | < th | dose independent | rect. | 15 | 15 |
| 100 | 44.08 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 21 |
| 102 | 44.10 | temperature | 25 | 270 | < th | dose independent | rect. | 11 | 20 |
| 175 | 45.25 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 8 |
| 215 | 45.63 | temperature | 25 | 270 | < th | dose independent | sin | 11 | NA |
| 216 | 45.63 | temperature | 30 | 90 | < th | dose dependent | sin | 10 | NA |
| 230 | 45.72 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 242 | 45.84 | temperature | 30 | 270 | < th | dose dependent | sin | 12 | NA |
| 317 | 46.46 | temperature | 20 | 10 | > th | dose independent | rect. | 7 | 21 |
| 344 | 46.76 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 356 | 46.91 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 359 | 46.95 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 420 | 47.38 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 10 |
| 532 | 48.04 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 9 |
| 581 | 48.24 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 686 | 48.74 | temperature | 15 | 270 | > th | dose dependent | sin | 13 | NA |
| 688 | 48.75 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 22 |
| 744 | 48.93 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 749 | 48.95 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 781 | 49.07 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 807 | 49.15 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 852 | 49.25 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 918 | 49.49 | temperature | 25 | 270 | > th | dose independent | sin | 12 | NA |
| 943 | 49.58 | temperature | 25 | 270 | < th | dose independent | rect. | 21 | 9 |