Os01g0674000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os01g0674000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.62 | 0.192 | 11.9 | 0.871 | 0.235 | -0.31 | -0.314 | 0.0625 | 0.223 | 12.8 | 10 | 1448 | -- | -- |
| 16.63 | 0.19 | 11.9 | 0.867 | 0.233 | -0.31 | -0.321 | -- | 0.223 | 12.8 | 10.01 | 1452 | -- | -- |
| 17.04 | 0.192 | 11.9 | 0.864 | 0.231 | -0.306 | -- | 0.0589 | 0.22 | 12.8 | 10.01 | 1447 | -- | -- |
| 17.06 | 0.192 | 11.9 | 0.863 | 0.234 | -0.308 | -- | -- | 0.222 | 12.8 | 10.01 | 1447 | -- | -- |
| 19.02 | 0.203 | 11.9 | 0.904 | -- | -0.348 | -- | 0.31 | 0.214 | -- | 10 | 1247 | -- | -- |
| 19.35 | 0.206 | 12 | 0.762 | 0.244 | -- | -0.257 | -- | 0.126 | 12.8 | -- | -- | -- | -- |
| 19.62 | 0.207 | 12 | 0.752 | 0.245 | -- | -- | -- | 0.125 | 12.9 | -- | -- | -- | -- |
| 19.06 | 0.203 | 11.9 | 0.853 | -- | -0.394 | -- | -- | 0.204 | -- | 10 | 1254 | -- | -- |
| 30.17 | 0.256 | 12 | -- | 0.256 | -0.398 | -- | -- | 0.117 | 13.4 | 40 | 7914 | -- | -- |
| 23.36 | 0.226 | 12 | 0.743 | -- | -- | -- | -- | 0.12 | -- | -- | -- | -- | -- |
| 34.54 | 0.275 | 12 | -- | 0.233 | -- | -- | -- | 0.041 | 12.8 | -- | -- | -- | -- |
| 30.64 | 0.258 | 12 | -- | -- | -0.509 | -- | -- | 0.0419 | -- | 49.79 | 29824 | -- | -- |
| 37.93 | 0.287 | 12 | -- | -- | -- | -- | -- | 0.0377 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.17 | radiation | 10 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 5 | 16.17 | radiation | 10 | 1440 | < th | dose dependent | rect. | 16 | 8 |
| 24 | 16.27 | temperature | 30 | 43200 | > th | dose dependent | rect. | 16 | 3 |
| 40 | 16.28 | temperature | 30 | 43200 | > th | dose dependent | sin | 12 | NA |
| 43 | 16.28 | temperature | 30 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 77 | 16.29 | wind | 5 | 43200 | > th | dose independent | rect. | 7 | 5 |
| 85 | 16.29 | temperature | 30 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 91 | 16.29 | temperature | 30 | 43200 | > th | dose dependent | rect. | 12 | 6 |
| 176 | 16.30 | temperature | 30 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 177 | 16.30 | temperature | 30 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 178 | 16.30 | temperature | 30 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 179 | 16.30 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 181 | 16.30 | wind | 5 | 43200 | < th | dose independent | rect. | 7 | 5 |
| 182 | 16.30 | temperature | 30 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 183 | 16.30 | temperature | 30 | 43200 | < th | dose independent | rect. | 17 | 14 |
| 192 | 16.30 | temperature | 30 | 43200 | > th | dose dependent | no | NA | NA |
| 374 | 16.31 | temperature | 30 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 401 | 16.31 | radiation | 10 | 1440 | < th | dose dependent | sin | 14 | NA |
| 446 | 16.32 | wind | 5 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 451 | 16.32 | temperature | 30 | 43200 | < th | dose independent | rect. | 16 | 19 |
| 489 | 16.33 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 15 |
| 494 | 16.33 | temperature | 30 | 43200 | > th | dose independent | rect. | 16 | 19 |
| 504 | 16.34 | temperature | 30 | 43200 | > th | dose independent | sin | 10 | NA |
| 506 | 16.34 | temperature | 30 | 43200 | < th | dose independent | sin | 10 | NA |
| 578 | 16.34 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 16 |
| 602 | 16.35 | temperature | 30 | 43200 | < th | dose independent | sin | 8 | NA |
| 607 | 16.35 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 609 | 16.35 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 3 |
| 640 | 16.35 | temperature | 25 | 14400 | > th | dose dependent | rect. | 20 | 3 |
| 647 | 16.36 | radiation | 1 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 663 | 16.36 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 16 |
| 671 | 16.36 | temperature | 25 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 680 | 16.37 | radiation | 10 | 14400 | < th | dose independent | sin | 13 | NA |
| 706 | 16.37 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 757 | 16.38 | radiation | 10 | 1440 | > th | dose independent | sin | 15 | NA |
| 760 | 16.38 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 765 | 16.38 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 6 |
| 784 | 16.38 | temperature | 25 | 43200 | > th | dose dependent | rect. | 3 | 5 |
| 808 | 16.39 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 905 | 16.39 | temperature | 25 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 908 | 16.39 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 927 | 16.39 | temperature | 25 | 43200 | > th | dose dependent | rect. | 23 | 10 |
| 944 | 16.40 | temperature | 30 | 43200 | > th | dose independent | sin | 3 | NA |