BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0560600 Os05g0560600|AK122091
(346 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G58630.1 | chr3:21683928-21685771 REVERSE LENGTH=322 115 4e-26
AT3G14180.1 | chr3:4707290-4708621 REVERSE LENGTH=444 113 1e-25
AT5G05550.2 | chr5:1639529-1640550 REVERSE LENGTH=250 104 6e-23
AT3G11100.1 | chr3:3476490-3477320 REVERSE LENGTH=250 100 1e-21
AT1G54060.1 | chr1:20180972-20182123 FORWARD LENGTH=384 86 3e-17
AT3G10030.1 | chr3:3092277-3094831 REVERSE LENGTH=543 71 7e-13
AT3G54390.1 | chr3:20137912-20138863 REVERSE LENGTH=297 70 1e-12
AT2G44730.1 | chr2:18437447-18438565 REVERSE LENGTH=373 67 1e-11
AT3G24490.1 | chr3:8911022-8912023 FORWARD LENGTH=334 65 7e-11
AT3G24860.1 | chr3:9073642-9074574 FORWARD LENGTH=311 53 2e-07
>AT3G58630.1 | chr3:21683928-21685771 REVERSE LENGTH=322
Length = 321
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 70/113 (61%), Gaps = 13/113 (11%)
Query: 30 PNPNLPYREDCWSEGETEALVRAWGSRYVELNRGNLRQKQWQEVADAVN------SXXXX 83
P+P REDCWSE T L++AWG+RYV+L+RGNLRQK WQEVA+AVN
Sbjct: 15 PSPATLSREDCWSEEATFTLIQAWGNRYVDLSRGNLRQKHWQEVANAVNDRHYNTGRNVS 74
Query: 84 XXXXXXXXTDVQCKNRVDTLKKKYKAERARVMPST-------WSFFPELDRLV 129
TDVQCKNR+DTLKKKYK E+ARV S W FF LD L+
Sbjct: 75 AAKSQPYRTDVQCKNRIDTLKKKYKVEKARVSESNPGAYISPWPFFSALDDLL 127
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 253 GFRELARAIEAFAEMYERVESAKQKQALEIERQRIDFLKQLEVKRMENFVDAHVKLARAK 312
G++E+A AIE ++YERVE K+K+ +E+E+QR+ F K+LE RM+ F + V+L + +
Sbjct: 235 GYKEVADAIERLGQIYERVEEKKRKEMVELEKQRMRFAKELECHRMQLFTEMQVRLHKLR 294
Query: 313 RIKKHAGTAPDGIGAAELVSSVAALP 338
R G P +A L + P
Sbjct: 295 RTSGSKG--PTSSASAALDYGMMDFP 318
>AT3G14180.1 | chr3:4707290-4708621 REVERSE LENGTH=444
Length = 443
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/100 (54%), Positives = 68/100 (68%), Gaps = 7/100 (7%)
Query: 37 REDCWSEGETEALVRAWGSRYVELNRGNLRQKQWQEVADAVNSXXXXXXXXXXXXTDVQC 96
REDCWSE T L+ AWG RY+EL+RGNL+QK W+EVA+ V+S TD+QC
Sbjct: 80 REDCWSEAATAVLIDAWGERYLELSRGNLKQKHWKEVAEIVSS---REDYGKIPKTDIQC 136
Query: 97 KNRVDTLKKKYKAERARVMP----STWSFFPELDRLVGPT 132
KNR+DT+KKKYK E+ R+ S W FF +LDRL+G T
Sbjct: 137 KNRIDTVKKKYKQEKVRIANGGGRSRWVFFDKLDRLIGST 176
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 47/64 (73%)
Query: 250 VDGGFRELARAIEAFAEMYERVESAKQKQALEIERQRIDFLKQLEVKRMENFVDAHVKLA 309
V +REL RAI F E YE+ E+AK +Q +E+E++R+ FLK+LE++RM+ FV ++++
Sbjct: 346 VGNKWRELTRAIMRFGEAYEQTENAKLQQVVEMEKERMKFLKELELQRMQFFVKTQLEIS 405
Query: 310 RAKR 313
+ K+
Sbjct: 406 QLKQ 409
>AT5G05550.2 | chr5:1639529-1640550 REVERSE LENGTH=250
Length = 249
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/97 (59%), Positives = 69/97 (71%), Gaps = 3/97 (3%)
Query: 37 REDCWSEGETEALVRAWGSRYVELNRGNLRQKQWQEVADAVNSXXXXXXXXXXXXTDVQC 96
RED WSE T LV AWG+RYV+LN GNLRQ W++VADAVNS TD+QC
Sbjct: 20 REDWWSEEATATLVEAWGNRYVKLNHGNLRQNDWKDVADAVNS---RHGDNSRKKTDLQC 76
Query: 97 KNRVDTLKKKYKAERARVMPSTWSFFPELDRLVGPTL 133
KNRVDTLKKKYK E+A++ PSTW F+ LD L+GP +
Sbjct: 77 KNRVDTLKKKYKTEKAKLSPSTWRFYNRLDVLIGPVV 113
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 46/67 (68%)
Query: 255 RELARAIEAFAEMYERVESAKQKQALEIERQRIDFLKQLEVKRMENFVDAHVKLARAKRI 314
RELA AI F E+YER+E KQ+ +E+E+QR++ K++E+KRM ++ +++ ++K
Sbjct: 177 RELATAILKFGEVYERIEGKKQQMMIELEKQRMEVTKEVELKRMNMLMEMQLEIEKSKHR 236
Query: 315 KKHAGTA 321
K+ + +
Sbjct: 237 KRASASV 243
>AT3G11100.1 | chr3:3476490-3477320 REVERSE LENGTH=250
Length = 249
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/97 (59%), Positives = 66/97 (68%), Gaps = 5/97 (5%)
Query: 37 REDCWSEGETEALVRAWGSRYVELNRGNLRQKQWQEVADAVNSXXXXXXXXXXXXTDVQC 96
RED WSE T L+ AWG RYV LNRGNLRQ W+EVADAVNS TDVQC
Sbjct: 18 REDWWSEDATATLIEAWGDRYVNLNRGNLRQNDWKEVADAVNS----SHGNGRPKTDVQC 73
Query: 97 KNRVDTLKKKYKAERARVMPSTWSFFPELDRLVGPTL 133
KNR+DTLKKKYK E+A+ + S W FF LD L+GP +
Sbjct: 74 KNRIDTLKKKYKTEKAKPL-SNWCFFDRLDFLIGPVM 109
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 46/68 (67%)
Query: 254 FRELARAIEAFAEMYERVESAKQKQALEIERQRIDFLKQLEVKRMENFVDAHVKLARAKR 313
FRELAR+I E +ER+E KQ+ +E+E+QR++ K+LE++RM ++ ++L ++K
Sbjct: 179 FRELARSILKLGEAFERIEGKKQQMMIELEKQRMEVAKELELQRMNMLMEMQLELEKSKL 238
Query: 314 IKKHAGTA 321
K+ A +
Sbjct: 239 GKRRAASG 246
>AT1G54060.1 | chr1:20180972-20182123 FORWARD LENGTH=384
Length = 383
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 65/100 (65%), Gaps = 8/100 (8%)
Query: 37 REDCWSEGETEALVRAWGSRYVELNRGNLRQKQWQEVADAVNSXXXXXXXXXXXXTDVQC 96
R+DCWSE T+ L+ AWG R+ E +G L+Q+ W+EVA+ VN TD+QC
Sbjct: 90 RDDCWSEEATKVLIEAWGDRFSEPGKGTLKQQHWKEVAEIVN----KSRQCKYPKTDIQC 145
Query: 97 KNRVDTLKKKYKAERARVM----PSTWSFFPELDRLVGPT 132
KNR+DT+KKKYK E+A++ PS W FF +L+ L+G T
Sbjct: 146 KNRIDTVKKKYKQEKAKIASGDGPSKWVFFKKLESLIGGT 185
>AT3G10030.1 | chr3:3092277-3094831 REVERSE LENGTH=543
Length = 542
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 12/105 (11%)
Query: 36 YREDC--WSEGETEALVRAWGSRYVELNRGNLRQKQWQEVADAVNSXXXXXXXXXXXXTD 93
YR+D WS+ L+ A+ ++ +LNRGNLR + W+EVA +V+
Sbjct: 154 YRKDREEWSDAAIACLLDAYSDKFTQLNRGNLRGRDWEEVASSVSERCEKLSKSVE---- 209
Query: 94 VQCKNRVDTLKKKYKAERARV-----MPSTWSFFPELDRLVGPTL 133
QCKN++D LKK+YK ER R+ S W +F +++ +VG +L
Sbjct: 210 -QCKNKIDNLKKRYKLERHRMSSGGTAASHWPWFKKMEDIVGNSL 253
>AT3G54390.1 | chr3:20137912-20138863 REVERSE LENGTH=297
Length = 296
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 37 REDCWSEGETEALVRAWGSRYVELNRGNLRQKQWQEVADAVNSXXXXXXXXXXXXTDVQC 96
+ D WSEG L+ A+ S++V NR L+ + W++VA V+S T QC
Sbjct: 34 KRDEWSEGAVSTLLEAYESKWVLRNRAKLKGQDWEDVAKHVSSRATHTKSPK---TQTQC 90
Query: 97 KNRVDTLKKKYKAERARVMPSTWSFFPELDRLVGPT 132
KN+++++KK+Y++E A S+W +P LD L+ T
Sbjct: 91 KNKIESMKKRYRSESATADGSSWPLYPRLDHLLRGT 126
>AT2G44730.1 | chr2:18437447-18438565 REVERSE LENGTH=373
Length = 372
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 61/110 (55%), Gaps = 19/110 (17%)
Query: 26 RMPPPNPNLPYREDCWSEGETEALVRAWGSRYVELNRGNLRQKQWQEVADAVNSXXXXXX 85
R+PPP CWS ET AL+ A+ ++ LNRGNL+ W+EVA+AV +
Sbjct: 58 RLPPP---------CWSLEETIALIDAYRDKWYALNRGNLKANHWEEVAEAVGA---NCP 105
Query: 86 XXXXXXTDVQCKNRVDTLKKKYKAE--RARVMP-----STWSFFPELDRL 128
T VQC+++++ L+K+Y+ E RAR +P S+W F ++ +
Sbjct: 106 DVILKKTAVQCRHKMEKLRKRYRTEIQRARSVPVARFISSWVHFKRMEAM 155
>AT3G24490.1 | chr3:8911022-8912023 FORWARD LENGTH=334
Length = 333
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 11/94 (11%)
Query: 41 WSEGETEALVRAWGSRYVELNRGNLRQKQWQEVADAVNSXXXXXXXXXXXXTDVQCKNRV 100
W E E L+ WG R+++L R +LR + W EVA+ V+ ++ QC+ +
Sbjct: 90 WREQEAFVLLEVWGDRFLQLGRRSLRNEDWNEVAEKVSE------ELRMEKSETQCRRMI 143
Query: 101 DTLKKKYKAERARVM-----PSTWSFFPELDRLV 129
D LK+KY+ E+ +V S WSFF +LD L+
Sbjct: 144 DDLKRKYRKEKIKVEKSGLGSSKWSFFNKLDMLL 177
>AT3G24860.1 | chr3:9073642-9074574 FORWARD LENGTH=311
Length = 310
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 40 CWSEGETEALVRAWGSRYVELNRGNLRQKQWQEVADAVNSXXXXXXXXXXXXTDVQCKNR 99
W++ ET L+ ++ ++ + RG L+ W+E+A A +S T QC+++
Sbjct: 64 LWTQDETLLLIESYKEKWFAIGRGPLKSTHWEEIAVAASS------RSGVERTSTQCRHK 117
Query: 100 VDTLKKKYKAERARVMP-STWSFFPELDRL 128
++ ++K++++ER + P S W F+ +++ L
Sbjct: 118 IEKMRKRFRSERQSMGPISIWPFYNQMEEL 147
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.131 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,056,051
Number of extensions: 151123
Number of successful extensions: 440
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 425
Number of HSP's successfully gapped: 15
Length of query: 346
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 247
Effective length of database: 8,392,385
Effective search space: 2072919095
Effective search space used: 2072919095
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)