Os01g0718900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0718900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.92 | 0.304 | 9.89 | 0.989 | 0.318 | 0.776 | 0.592 | 1.85 | 0.26 | 18.4 | 21 | 1376 | -- | -- |
| 48.21 | 0.323 | 9.95 | 0.647 | 0.271 | 0.492 | 0.642 | -- | 0.155 | 17.6 | 22.1 | 929 | -- | -- |
| 42.74 | 0.304 | 9.9 | 0.971 | 0.31 | 0.774 | -- | 1.85 | 0.257 | 18.7 | 21 | 1376 | -- | -- |
| 49.04 | 0.326 | 9.95 | 0.572 | 0.309 | 0.55 | -- | -- | 0.156 | 19.1 | 21.7 | 1631 | -- | -- |
| 48.14 | 0.323 | 9.89 | 0.974 | -- | 0.773 | -- | 1.85 | 0.256 | -- | 21.02 | 1420 | -- | -- |
| 58.09 | 0.357 | 9.92 | 0.828 | 0.316 | -- | 0.574 | -- | 0.324 | 18.7 | -- | -- | -- | -- |
| 58.84 | 0.359 | 9.92 | 0.817 | 0.318 | -- | -- | -- | 0.325 | 19.1 | -- | -- | -- | -- |
| 52.55 | 0.338 | 9.94 | 0.639 | -- | 0.518 | -- | -- | 0.159 | -- | 21.9 | 649 | -- | -- |
| 56.45 | 0.35 | 9.97 | -- | 0.294 | 0.715 | -- | -- | 0.0331 | 19.2 | 21.6 | 2098 | -- | -- |
| 64.2 | 0.374 | 9.91 | 0.811 | -- | -- | -- | -- | 0.319 | -- | -- | -- | -- | -- |
| 76.45 | 0.409 | 9.94 | -- | 0.31 | -- | -- | -- | 0.234 | 19.3 | -- | -- | -- | -- |
| 60.28 | 0.362 | 9.97 | -- | -- | 0.777 | -- | -- | 0.032 | -- | 21.56 | 2078 | -- | -- |
| 81.56 | 0.422 | 9.93 | -- | -- | -- | -- | -- | 0.229 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.72 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 3 | 42.75 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 22 |
| 5 | 42.99 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 6 | 43.01 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 7 | 43.11 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 18 | 43.46 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 18 | 12 |
| 19 | 43.46 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 21 | 43.48 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 23 | 43.54 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 10 |
| 31 | 43.62 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 13 | 17 |
| 50 | 43.73 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 52 | 43.74 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 53 | 43.74 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 57 | 43.75 | temperature | 10.0 | 10 | > th | dose dependent | no | NA | NA |
| 65 | 43.81 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 66 | 43.82 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 18 | 12 |
| 68 | 43.84 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 10 |
| 75 | 43.85 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 82 | 43.88 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 83 | 43.90 | temperature | 20.0 | 1440 | > th | dose independent | sin | 12 | NA |
| 101 | 43.99 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 13 | 17 |
| 132 | 44.07 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 137 | 44.08 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 18 | 21 |
| 151 | 44.10 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 171 | 44.16 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 21 |
| 173 | 44.17 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 19 |
| 210 | 44.21 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 214 | 44.22 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 218 | 44.23 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 221 | 44.25 | temperature | 20.0 | 1440 | > th | dose independent | no | NA | NA |
| 258 | 44.32 | temperature | 20.0 | 1440 | < th | dose independent | sin | 12 | NA |
| 269 | 44.34 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 270 | 44.34 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 273 | 44.35 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 274 | 44.36 | temperature | 25.0 | 270 | < th | dose independent | rect. | 24 | 22 |
| 276 | 44.36 | temperature | 30.0 | 10 | < th | dose dependent | no | NA | NA |
| 292 | 44.40 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 311 | 44.45 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 15 |
| 335 | 44.46 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 343 | 44.48 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 349 | 44.49 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 18 | 21 |
| 363 | 44.51 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 364 | 44.52 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 20 |
| 403 | 44.57 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 443 | 44.61 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 448 | 44.63 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 1 | 22 |
| 465 | 44.66 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 15 | NA |
| 472 | 44.67 | temperature | 20.0 | 1440 | < th | dose independent | no | NA | NA |
| 509 | 44.70 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 10 | 18 |
| 520 | 44.71 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 539 | 44.76 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 24 | 2 |
| 548 | 44.77 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 563 | 44.79 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 613 | 44.87 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 5 | 18 |
| 642 | 44.93 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 688 | 44.98 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 712 | 45.02 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 718 | 45.03 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 722 | 45.03 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 780 | 45.11 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 799 | 45.15 | temperature | 25.0 | 90 | < th | dose independent | rect. | 12 | 23 |
| 838 | 45.20 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 875 | 45.25 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 889 | 45.26 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 890 | 45.26 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 929 | 45.31 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 953 | 45.33 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 21 | 23 |