BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0556000 Os02g0556000|Os02g0556000
(654 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0556000 Glycosyl transferase, family 8 protein 1160 0.0
Os01g0880200 Glycosyl transferase, family 8 protein 559 e-159
Os03g0184300 Glycosyl transferase, family 8 protein 367 e-101
Os05g0426400 Conserved hypothetical protein 177 2e-44
Os02g0624400 Glycosyl transferase, family 8 protein 99 1e-20
>Os02g0556000 Glycosyl transferase, family 8 protein
Length = 654
Score = 1160 bits (3002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 575/654 (87%), Positives = 575/654 (87%)
Query: 1 MVKTNRFINSLSKRGYIGSYHYEKDAKYRPFSALLPEGSNPKMLYVKLVLIILMCGSFVS 60
MVKTNRFINSLSKRGYIGSYHYEKDAKYRPFSALLPEGSNPKMLYVKLVLIILMCGSFVS
Sbjct: 1 MVKTNRFINSLSKRGYIGSYHYEKDAKYRPFSALLPEGSNPKMLYVKLVLIILMCGSFVS 60
Query: 61 LLNSPSIHHNDDHHTESSAGVPRVSYEPDDTRYVSDVTVDWPKISKAMQLVAGAEHGGGA 120
LLNSPSIHHNDDHHTESSAGVPRVSYEPDDTRYVSDVTVDWPKISKAMQLVAGAEHGGGA
Sbjct: 61 LLNSPSIHHNDDHHTESSAGVPRVSYEPDDTRYVSDVTVDWPKISKAMQLVAGAEHGGGA 120
Query: 121 RVALLNFDDGEVQQWRTALPQTAAAVARLERAGSNVTWEHLYPEWIDEEELYHAPTCPDL 180
RVALLNFDDGEVQQWRTALPQTAAAVARLERAGSNVTWEHLYPEWIDEEELYHAPTCPDL
Sbjct: 121 RVALLNFDDGEVQQWRTALPQTAAAVARLERAGSNVTWEHLYPEWIDEEELYHAPTCPDL 180
Query: 181 PEPAVDADGDGEEVAVFDVVAVKLPCRRGGGWSKDVXXXXXXXXXXXXXXXXXXXXXXXH 240
PEPAVDADGDGEEVAVFDVVAVKLPCRRGGGWSKDV H
Sbjct: 181 PEPAVDADGDGEEVAVFDVVAVKLPCRRGGGWSKDVARLHLQLAAARLAATRGRGGAAAH 240
Query: 241 VLVVSASRCFPIPNLFRCRDEVAPRDGDVWLYRPDADALRRDLALPVGSCRLAMXXXXXX 300
VLVVSASRCFPIPNLFRCRDEVAPRDGDVWLYRPDADALRRDLALPVGSCRLAM
Sbjct: 241 VLVVSASRCFPIPNLFRCRDEVAPRDGDVWLYRPDADALRRDLALPVGSCRLAMPFSALA 300
Query: 301 XXXXXXXXXXXXXXXXXXTILHSEELYACGALVAAQSIRMASASGAPSEPERDMVALVDE 360
TILHSEELYACGALVAAQSIRMASASGAPSEPERDMVALVDE
Sbjct: 301 APHVAAASAPPPRREAYATILHSEELYACGALVAAQSIRMASASGAPSEPERDMVALVDE 360
Query: 361 TISARHRGALEAAGWKVRAIRRVRNPRAAADAYNEWNYSKFWLWSLTEYDRVVFLDADLL 420
TISARHRGALEAAGWKVRAIRRVRNPRAAADAYNEWNYSKFWLWSLTEYDRVVFLDADLL
Sbjct: 361 TISARHRGALEAAGWKVRAIRRVRNPRAAADAYNEWNYSKFWLWSLTEYDRVVFLDADLL 420
Query: 421 VQRPMSPLFAMPEVSATANHGTLFNSGVMVVEPCGCTLRLLMDHIADIDSYNGGDQGYLN 480
VQRPMSPLFAMPEVSATANHGTLFNSGVMVVEPCGCTLRLLMDHIADIDSYNGGDQGYLN
Sbjct: 421 VQRPMSPLFAMPEVSATANHGTLFNSGVMVVEPCGCTLRLLMDHIADIDSYNGGDQGYLN 480
Query: 481 EVFSWWHRLPSHANFMKHFWEGDSGEXXXXXXXXXXXXXXXXXXXXHFVGMKPWFCFRDY 540
EVFSWWHRLPSHANFMKHFWEGDSGE HFVGMKPWFCFRDY
Sbjct: 481 EVFSWWHRLPSHANFMKHFWEGDSGERLAAARRAVLAAEPAVALAVHFVGMKPWFCFRDY 540
Query: 541 DCNWNSPQLRQFASDEAHARWWRAHDAMPAALQGFCLLDERQKALLRWDAAEARAANFSD 600
DCNWNSPQLRQFASDEAHARWWRAHDAMPAALQGFCLLDERQKALLRWDAAEARAANFSD
Sbjct: 541 DCNWNSPQLRQFASDEAHARWWRAHDAMPAALQGFCLLDERQKALLRWDAAEARAANFSD 600
Query: 601 GHWRVPIADPRRNICXXXXXXXXXXXXCVEREIENRRVEGNRVTTSYAKLIDNF 654
GHWRVPIADPRRNIC CVEREIENRRVEGNRVTTSYAKLIDNF
Sbjct: 601 GHWRVPIADPRRNICATAAGDGEAAAACVEREIENRRVEGNRVTTSYAKLIDNF 654
>Os01g0880200 Glycosyl transferase, family 8 protein
Length = 635
Score = 559 bits (1441), Expect = e-159, Method: Compositional matrix adjust.
Identities = 291/607 (47%), Positives = 367/607 (60%), Gaps = 32/607 (5%)
Query: 12 SKRGYIGSYHYEKDAKYRPFSALLPEGSNPKMLYVKLVLIILMCGSFVSLLNSPSIHHND 71
+KR S +++ K+ F +L + S K ++L+L +M +F++LL +PS++
Sbjct: 21 AKRRTQKSKSFKEVEKFDVF--VLEKSSGCKFRSLQLLLFAIMSAAFLTLLYTPSVY--- 75
Query: 72 DHHTESSAGVPRV---SYEPDDTRYVSDVTVDWPKISKAMQLVAGAEHGGGARVALLNFD 128
DH +SS+ D RYVS + V W + K ++ + E +V LLNF+
Sbjct: 76 DHQMQSSSRFVSGWIWDKTIPDPRYVSSLGVQWEDVYKTVENLNDGERK--LKVGLLNFN 133
Query: 129 DGEVQQWRTALPQTAAAVARLERAGSNVTWEHLYPEWIDEEELYHAPTCPDLPEPAVDAD 188
E+ W LP + ++ RLE A ++TW+ LYPEWIDEEE P+CP LP+P
Sbjct: 134 STEIGSWTQLLPDSDFSIIRLEHAKESITWQTLYPEWIDEEEETEIPSCPSLPDPIFPRG 193
Query: 189 GDGEEVAVFDVVAVKLPCRRGGGWSKDVXXXXXXXXXXXXXXXXXXXXXXXHVLVVSASR 248
FDVVAVKLPC R GGWS+DV HVL V+
Sbjct: 194 TH------FDVVAVKLPCTRAGGWSRDVARLHLQLSAAKVAVTASRGNRGIHVLFVTD-- 245
Query: 249 CFPIPNLFRCRDEVAPRDGDVWLYRPDADALRRDLALPVGSCRLAMXXXXXXXXXXXXXX 308
CFPIPNLF C++ V +G+ W+Y+PD ALR L LPVGSC LA+
Sbjct: 246 CFPIPNLFSCKNLVK-HEGNAWMYKPDLKALREKLRLPVGSCELAVPLKAKARLYSVDRR 304
Query: 309 XXXXXXXXXXTILHSEELYACGALVAAQSIRMASASGAPSEPERDMVALVDETISARHRG 368
TILHS Y CGA+ AAQSIR A ++ RD V LVDETIS HR
Sbjct: 305 REAYA-----TILHSASEYVCGAITAAQSIRQAGST-------RDFVILVDETISNHHRK 352
Query: 369 ALEAAGWKVRAIRRVRNPRAAADAYNEWNYSKFWLWSLTEYDRVVFLDADLLVQRPMSPL 428
LEAAGWKVR I+R+RNP+A DAYNEWNYSKF LW LT+YD+++F+DADLL+ R + L
Sbjct: 353 GLEAAGWKVRIIQRIRNPKAERDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNVDFL 412
Query: 429 FAMPEVSATANHGTLFNSGVMVVEPCGCTLRLLMDHIADIDSYNGGDQGYLNEVFSWWHR 488
FAMPE++AT N+ TLFNSGVMV+EP CT +LLMDHI +I SYNGGDQGYLNE+F+WWHR
Sbjct: 413 FAMPEITATGNNATLFNSGVMVIEPSNCTFQLLMDHINEITSYNGGDQGYLNEIFTWWHR 472
Query: 489 LPSHANFMKHFWEGDSGEXXXXXXXXXXXXXXXXXXXXHFVGMKPWFCFRDYDCNWNSPQ 548
+P H NF+KHFWEGD E H++G+KPW CFRDYDCNWN+P
Sbjct: 473 IPKHMNFLKHFWEGDE-EEVKVKKTRLFGADPPILYVLHYLGLKPWLCFRDYDCNWNNPI 531
Query: 549 LRQFASDEAHARWWRAHDAMPAALQGFCLLDERQKALLRWDAAEARAANFSDGHWRVPIA 608
LR+FASD AHARWW+ HD MP LQ +CLL RQKA L WD +A ANF+DGHWR I
Sbjct: 532 LREFASDVAHARWWKVHDKMPKKLQHYCLLRSRQKAGLEWDRRQAEKANFTDGHWRRNIT 591
Query: 609 DPRRNIC 615
DPR C
Sbjct: 592 DPRLKTC 598
>Os03g0184300 Glycosyl transferase, family 8 protein
Length = 500
Score = 367 bits (941), Expect = e-101, Method: Compositional matrix adjust.
Identities = 217/515 (42%), Positives = 271/515 (52%), Gaps = 37/515 (7%)
Query: 115 EHGGGARVALLNFDDGEVQQWRTALPQTAAAVA-RLERAGSNVTWEHLYPEWIDEEELYH 173
E G R+ L+N E+ AL AV ER W L+PEWIDEEE
Sbjct: 4 ELRGRLRMGLVNIGRDEL----LALGVEGDAVGVDFERVSDMFRWSDLFPEWIDEEEDDE 59
Query: 174 APTCPDLPEPAVDADGDGEEVAVFDVVAVKLPCRRG-GGWSKDVXXXXXXXXXXXXXXXX 232
P+CP+LP P GD DVV LPC R W++DV
Sbjct: 60 GPSCPELPMPDFSRYGD------VDVVVASLPCNRSDAAWNRDVFRLQVHLVTAHMAARK 113
Query: 233 ------XXXXXXXHVLVVSASRCFPIPNLFRCRDEVAPRDGDVWLYRPDADALRRDLALP 286
V VV S C P+ +LFRC DE RDG+ W+Y D + L L LP
Sbjct: 114 GLRHDAGGGGGGGRVRVVVRSECEPMMDLFRC-DEAVGRDGEWWMYMVDVERLEEKLRLP 172
Query: 287 VGSCRLAM---------XXXXXXXXXXXXXXXXXXXXXXXXTILHSEELYACGALVAAQS 337
VGSC LA+ T+LHS + Y CGA+V AQS
Sbjct: 173 VGSCNLALPLWGPGGIQEVFNVSELTAAAATAGRPRREAYATVLHSSDTYLCGAIVLAQS 232
Query: 338 IRMASASGAPSEPERDMVALVDETISARHRGALEAAGWKVRAIRRVRNPRAAADAYNEWN 397
IR A ++ RD+V L D T+S AL AAGW R I+R+RNPRA YNE+N
Sbjct: 233 IRRAGST-------RDLVLLHDHTVSKPALAALVAAGWTPRKIKRIRNPRAERGTYNEYN 285
Query: 398 YSKFWLWSLTEYDRVVFLDADLLVQRPMSPLFAMPEVSATANHGTLFNSGVMVVEPCGCT 457
YSKF LW LT+YDRVVF+DAD+LV R + LF P+++A N G+LFNSGVMV+EP CT
Sbjct: 286 YSKFRLWQLTDYDRVVFVDADILVLRDLDALFGFPQLTAVGNDGSLFNSGVMVIEPSQCT 345
Query: 458 LRLLMDHIADIDSYNGGDQGYLNEVFSWWHRLPSHANFMKHFWEGDSGEXXXXXXXXXXX 517
+ L+ I SYNGGDQG+LNEVF WWHRLP N++K+FW + E
Sbjct: 346 FQSLIRQRRTIRSYNGGDQGFLNEVFVWWHRLPRRVNYLKNFWANTTAE--RALKERLFR 403
Query: 518 XXXXXXXXXHFVGMKPWFCFRDYDCNWNSPQLRQFASDEAHARWWRAHDAMPAALQGFCL 577
H++G+KPW C+RDYDCNWN R +ASD AHARWW+ +D M A++ C
Sbjct: 404 ADPAEVWSIHYLGLKPWTCYRDYDCNWNIGDQRVYASDAAHARWWQVYDDMGEAMRSPCR 463
Query: 578 LDERQKALLRWDAAEARAANFSDGHWRVPIADPRR 612
L ER+K + WD A A FSD HW++ I DPR+
Sbjct: 464 LSERRKIEIAWDRHLAEEAGFSDHHWKINITDPRK 498
>Os05g0426400 Conserved hypothetical protein
Length = 341
Score = 177 bits (450), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/268 (39%), Positives = 146/268 (54%), Gaps = 26/268 (9%)
Query: 34 LLPEGSNPKMLYVKLVLIILMCGSFVSLLNSPSIHHNDDHHTESSAGVP------RVSYE 87
+L + S K ++ +L+ + +F++LL +P+ + +H +SS V + SY+
Sbjct: 39 VLEKNSGCKFKTLRYLLLAITSATFLTLL-TPTFY---EHQLQSSRYVDVGWIWDKPSYD 94
Query: 88 PDDTRYVSDVTVDWPKISKAMQ-LVAGAEHGGGARVALLNFDDGEVQQWRTALPQTAAAV 146
P RYVS V V W + KA++ L G++ +V LLNF+ E W LP +A ++
Sbjct: 95 P---RYVSSVDVQWEDVYKALENLNDGSQK---LKVGLLNFNSTEYGSWAQLLPGSAVSI 148
Query: 147 ARLERAGSNVTWEHLYPEWIDEEELYHAPTCPDLPEPAVDADGDGEEVAVFDVVAVKLPC 206
RLE A ++TW+ LYPEWIDEEE P CP LP+P V FDV+AVKLPC
Sbjct: 149 VRLEHAKDSITWDTLYPEWIDEEEETDIPACPSLPDPNVRKGSH------FDVIAVKLPC 202
Query: 207 RRGGGWSKDVXXXXXXXXXXXXXXXXXXXXXXXHVLVVSASRCFPIPNLFRCRDEVAPRD 266
R GGWS+DV HVL V + CFPIPNLF C++ V +
Sbjct: 203 TRVGGWSRDVARLHLQLSAAKLAVASSKGNQKVHVLFV--TDCFPIPNLFPCKNLVK-HE 259
Query: 267 GDVWLYRPDADALRRDLALPVGSCRLAM 294
G+ WLY PD ALR L LPVGSC LA+
Sbjct: 260 GNAWLYSPDLKALREKLRLPVGSCELAV 287
>Os02g0624400 Glycosyl transferase, family 8 protein
Length = 547
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 87/166 (52%), Gaps = 8/166 (4%)
Query: 319 TILHSEELYACGALVAAQSIRMASASGAPSEPERDMVALVDETISARHRGALEAAGWKVR 378
T+L+ +E + G V +SIR ++ RD+V LV + +S R LEA G+ V+
Sbjct: 42 TLLYGDE-FVLGVRVLGKSIR-------DTDTSRDLVVLVSDGVSEYSRKLLEADGFIVK 93
Query: 379 AIRRVRNPRAAADAYNEWNYSKFWLWSLTEYDRVVFLDADLLVQRPMSPLFAMPEVSATA 438
I + NP Y+K ++++T Y +V +LDAD +V + + +F + A
Sbjct: 94 HITLLANPNQVRPTRFWGVYTKLKIFNMTSYKKVAYLDADTIVVKSIEDIFNCGKFCANL 153
Query: 439 NHGTLFNSGVMVVEPCGCTLRLLMDHIADIDSYNGGDQGYLNEVFS 484
H NSGVMVVEP +MD + + SY GGDQG+LN ++
Sbjct: 154 KHSERMNSGVMVVEPSETLFNDMMDKVNSLPSYTGGDQGFLNSYYA 199
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.135 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,471,209
Number of extensions: 946150
Number of successful extensions: 2372
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 2355
Number of HSP's successfully gapped: 5
Length of query: 654
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 547
Effective length of database: 11,448,903
Effective search space: 6262549941
Effective search space used: 6262549941
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 159 (65.9 bits)