BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0545000 Os02g0545000|AK062923
(93 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0545000 Similar to Myosin 190 2e-49
Os03g0860700 Similar to Myosin XI B 140 1e-34
Os02g0816900 Similar to Myosin 107 2e-24
Os06g0488200 Similar to Myosin heavy chain (Fragment) 90 3e-19
Os10g0395100 Dilute domain containing protein 84 3e-17
Os02g0777700 Similar to Myosin XI B 80 4e-16
Os10g0339400 IQ calmodulin-binding region domain containing... 76 6e-15
>Os02g0545000 Similar to Myosin
Length = 93
Score = 190 bits (482), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 93/93 (100%), Positives = 93/93 (100%)
Query: 1 VLSVQQLYKICTQYWDDKYNTESVSEEVLDEMRTLITKESGQDSSENTFLLDDEISMPIS 60
VLSVQQLYKICTQYWDDKYNTESVSEEVLDEMRTLITKESGQDSSENTFLLDDEISMPIS
Sbjct: 1 VLSVQQLYKICTQYWDDKYNTESVSEEVLDEMRTLITKESGQDSSENTFLLDDEISMPIS 60
Query: 61 LEEIGDSMDSKEFQHIAPPPELVAIPAFQFLKS 93
LEEIGDSMDSKEFQHIAPPPELVAIPAFQFLKS
Sbjct: 61 LEEIGDSMDSKEFQHIAPPPELVAIPAFQFLKS 93
>Os03g0860700 Similar to Myosin XI B
Length = 1457
Score = 140 bits (354), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 68/104 (65%), Positives = 83/104 (79%), Gaps = 11/104 (10%)
Query: 1 VLSVQQLYKICTQYWDDKYNTESVSEEVLDEMRTLITKESG-----------QDSSENTF 49
LSVQQLYKICTQYWDDKYNTESVSEEVL+EM+TL+ + +D+S+ TF
Sbjct: 1354 ALSVQQLYKICTQYWDDKYNTESVSEEVLNEMKTLMNGKDASDGTLKSLMNEKDASDGTF 1413
Query: 50 LLDDEISMPISLEEIGDSMDSKEFQHIAPPPELVAIPAFQFLKS 93
LL++EISMP+SLEEIGDSMD+KEFQ++ PP +L+ PAFQFLKS
Sbjct: 1414 LLNEEISMPLSLEEIGDSMDAKEFQNVVPPQQLLDNPAFQFLKS 1457
>Os02g0816900 Similar to Myosin
Length = 1510
Score = 107 bits (267), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/92 (54%), Positives = 71/92 (77%), Gaps = 1/92 (1%)
Query: 1 VLSVQQLYKICTQYWDDKYNTESVSEEVLDEMRTLITKESGQDSSENTFLLDDEISMPIS 60
+LSVQQLY+ICTQYWDDKYNT+SVS +VL MR L+T++S ++ ++FLLDD S+P S
Sbjct: 1419 ILSVQQLYRICTQYWDDKYNTQSVSSDVLSNMRVLMTEDSN-NAESSSFLLDDNSSIPFS 1477
Query: 61 LEEIGDSMDSKEFQHIAPPPELVAIPAFQFLK 92
+++I +S+ K+F + P EL+ PAFQFL+
Sbjct: 1478 VDDITNSIQEKDFTDVKPAEELLENPAFQFLQ 1509
>Os06g0488200 Similar to Myosin heavy chain (Fragment)
Length = 1529
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 1 VLSVQQLYKICTQYWDDKYNTESVSEEVLDEMRTLITKESGQDSSENTFLLDDEISMPIS 60
VLS+QQLY+I T YWDDKY T SVS EV+ MR L+T++S S N+FLLDD+ S+P S
Sbjct: 1435 VLSIQQLYRISTMYWDDKYGTHSVSPEVISNMRVLMTEDSNNPVS-NSFLLDDDSSIPFS 1493
Query: 61 LEEIGDSMDSKEFQHIAPPPELVAIPAFQFL 91
+++I SM+ + I PPP + F FL
Sbjct: 1494 VDDISKSMEQIDISDIEPPPLIRENSGFVFL 1524
>Os10g0395100 Dilute domain containing protein
Length = 481
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 1 VLSVQQLYKICTQYWDDKYNTESVSEEVLDEMRTLITKESGQDSSENTFLLDDEISMPIS 60
LSV+Q+Y++CT YWDDKY T SVS EV+ +MR +++ + Q+ N+FLLDD++S+P +
Sbjct: 381 ALSVRQIYRLCTMYWDDKYGTHSVSAEVVAKMRDMVSSD-AQNPVSNSFLLDDDLSIPFT 439
Query: 61 LEEIGDSMDSKEFQHIAPPPELVAIPAFQFL 91
EEI + + + +I P L + + QFL
Sbjct: 440 TEEIAEEVPDIDMSNIEMPSSLRHVHSAQFL 470
>Os02g0777700 Similar to Myosin XI B
Length = 1494
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 60/90 (66%), Gaps = 1/90 (1%)
Query: 2 LSVQQLYKICTQYWDDKYNTESVSEEVLDEMRTLITKESGQDSSENTFLLDDEISMPISL 61
LSV+Q+Y+IC+ YWDDKYNT+ +S EV+ MR + K + Q+ N+FLLDD++S+P S
Sbjct: 1391 LSVRQIYRICSMYWDDKYNTQGISNEVVSAMREEVNKYT-QNLVSNSFLLDDDLSIPFST 1449
Query: 62 EEIGDSMDSKEFQHIAPPPELVAIPAFQFL 91
E++ ++ + ++ + P L P+ Q L
Sbjct: 1450 EDLSMAIPAIDYADVEFPESLHHYPSVQLL 1479
>Os10g0339400 IQ calmodulin-binding region domain containing protein
Length = 729
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Query: 2 LSVQQLYKICTQYWDDKYNTESVSEEVLDEMRTLITKESGQDSSENTFLLDDEISMPISL 61
LSV+Q+Y+IC+ YWDDKYNT+ +S EV+ MR + K++ Q+ N+FLLDD++ +P S
Sbjct: 632 LSVRQIYRICSMYWDDKYNTQGISNEVVSAMREEVNKDT-QNLVSNSFLLDDDLCIPFST 690
Query: 62 EEIGDSMDSKEFQHIAPPPELVAIPAFQFL 91
E++ ++ + ++ I P L + Q L
Sbjct: 691 EDLSIAIPAIDYVDIELPESLHHYASVQLL 720
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.130 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,151,837
Number of extensions: 106408
Number of successful extensions: 347
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 7
Length of query: 93
Length of database: 17,035,801
Length adjustment: 62
Effective length of query: 31
Effective length of database: 13,798,533
Effective search space: 427754523
Effective search space used: 427754523
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 149 (62.0 bits)