Os02g0545000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Myosin.
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Os02g0545000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Myosin.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.77 | 0.328 | 9.23 | 0.0308 | 0.557 | -1.53 | -0.345 | 0.81 | 0.826 | 23.8 | 20.92 | 94 | -- | -- |
| 49.22 | 0.327 | 9.25 | -0.0909 | 0.582 | -1.49 | -0.448 | -- | 0.784 | 23.8 | 20.76 | 104 | -- | -- |
| 49.13 | 0.326 | 9.23 | 0.105 | 0.573 | -1.55 | -- | 1.16 | 0.841 | 23.7 | 20.98 | 107 | -- | -- |
| 50.25 | 0.33 | 9.25 | -0.0996 | 0.58 | -1.47 | -- | -- | 0.782 | 23.8 | 20.77 | 107 | -- | -- |
| 60.01 | 0.363 | 9.2 | 0.209 | -- | -1.97 | -- | 1.36 | 0.926 | -- | 20.98 | 107 | -- | -- |
| 84.8 | 0.432 | 9.31 | -0.432 | 1.02 | -- | -0.274 | -- | 0.531 | 1.58 | -- | -- | -- | -- |
| 85.1 | 0.432 | 9.3 | -0.423 | 1.02 | -- | -- | -- | 0.533 | 1.58 | -- | -- | -- | -- |
| 61.74 | 0.366 | 9.22 | -0.0113 | -- | -1.91 | -- | -- | 0.845 | -- | 20.98 | 7 | -- | -- |
| 50.5 | 0.331 | 9.25 | -- | 0.573 | -1.5 | -- | -- | 0.798 | 23.7 | 20.71 | 107 | -- | -- |
| 148.74 | 0.57 | 9.29 | -0.382 | -- | -- | -- | -- | 0.555 | -- | -- | -- | -- | -- |
| 89.82 | 0.443 | 9.29 | -- | 1.01 | -- | -- | -- | 0.58 | 1.57 | -- | -- | -- | -- |
| 61.69 | 0.366 | 9.22 | -- | -- | -1.92 | -- | -- | 0.863 | -- | 20.98 | 8 | -- | -- |
| 152.59 | 0.577 | 9.28 | -- | -- | -- | -- | -- | 0.598 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.03 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 2 | 49.06 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 3 | 49.36 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 5 | 49.73 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 6 | 49.80 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 9 | 50.16 | temperature | 20 | 90 | > th | dose dependent | rect. | 2 | 23 |
| 16 | 50.35 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 23 | 50.77 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 27 | 50.92 | temperature | 25 | 4320 | > th | dose independent | rect. | 16 | 20 |
| 37 | 51.04 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 40 | 51.09 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 44 | 51.15 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 18 |
| 49 | 51.20 | temperature | 25 | 4320 | < th | dose independent | rect. | 16 | 19 |
| 50 | 51.21 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 52 | 51.22 | temperature | 25 | 1440 | > th | dose independent | rect. | 18 | 4 |
| 53 | 51.23 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 59 | 51.26 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 64 | 51.28 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 65 | 51.29 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 66 | 51.29 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 18 |
| 78 | 51.33 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 83 | 51.35 | temperature | 20 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 85 | 51.36 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 11 |
| 100 | 51.42 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 10 |
| 114 | 51.48 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 9 |
| 115 | 51.48 | temperature | 20 | 14400 | > th | dose dependent | rect. | 19 | 3 |
| 116 | 51.48 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 6 |
| 119 | 51.49 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 122 | 51.51 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 128 | 51.52 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 137 | 51.52 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 154 | 51.55 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 159 | 51.55 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 2 |
| 166 | 51.57 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 18 |
| 185 | 51.60 | temperature | 25 | 4320 | > th | dose independent | sin | 6 | NA |
| 199 | 51.62 | temperature | 20 | 14400 | > th | dose dependent | rect. | 18 | 7 |
| 221 | 51.65 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 227 | 51.65 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 238 | 51.66 | temperature | 20 | 14400 | > th | dose dependent | rect. | 17 | 15 |
| 250 | 51.68 | temperature | 25 | 14400 | > th | dose dependent | rect. | 13 | 5 |
| 262 | 51.69 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 267 | 51.71 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 287 | 51.73 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 11 |
| 349 | 51.79 | temperature | 20 | 4320 | > th | dose dependent | sin | 9 | NA |
| 358 | 51.80 | temperature | 25 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 371 | 51.81 | temperature | 20 | 14400 | > th | dose dependent | sin | 11 | NA |
| 372 | 51.81 | temperature | 25 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 384 | 51.82 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 402 | 51.83 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 404 | 51.83 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 3 |
| 406 | 51.83 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 23 |
| 423 | 51.84 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 432 | 51.85 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 23 |
| 454 | 51.87 | temperature | 25 | 4320 | > th | dose independent | no | NA | NA |
| 476 | 51.88 | temperature | 25 | 14400 | > th | dose dependent | rect. | 8 | 10 |
| 592 | 51.97 | temperature | 25 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 612 | 51.98 | temperature | 25 | 1440 | > th | dose independent | sin | 15 | NA |
| 615 | 51.98 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 23 |
| 637 | 52.00 | temperature | 25 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 650 | 52.01 | temperature | 25 | 4320 | < th | dose independent | sin | 6 | NA |
| 675 | 52.02 | temperature | 25 | 14400 | > th | dose dependent | sin | 23 | NA |
| 714 | 52.05 | temperature | 25 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 744 | 52.07 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 8 |
| 839 | 52.14 | temperature | 25 | 1440 | < th | dose independent | rect. | 18 | 4 |
| 843 | 52.14 | temperature | 25 | 4320 | < th | dose independent | rect. | 24 | 23 |
| 857 | 52.15 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 23 |
| 858 | 52.15 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 23 |
| 904 | 52.18 | temperature | 25 | 4320 | < th | dose independent | no | NA | NA |
| 907 | 52.18 | temperature | 20 | 14400 | > th | dose independent | rect. | 19 | 10 |
| 937 | 52.20 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 984 | 52.23 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 23 |
| 997 | 52.24 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 9 |