BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0512400 Os02g0512400|AK073461
(135 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0512400 Similar to Glutaredoxin 130 3e-31
Os04g0393500 Glutaredoxin-like, plant II family protein 115 1e-26
Os12g0538600 Glutaredoxin-like, plant II family protein 84 4e-17
Os01g0936000 Similar to AT.I.24-1 protein (Fragment) 78 2e-15
Os11g0655900 Glutaredoxin-like, plant II family protein 73 6e-14
Os11g0656000 Glutaredoxin-like, plant II family protein 69 1e-12
Os11g0656801 Similar to Glutaredoxin 66 6e-12
Os11g0656400 65 2e-11
>Os02g0512400 Similar to Glutaredoxin
Length = 135
Score = 130 bits (327), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/135 (53%), Positives = 72/135 (53%)
Query: 1 MQYGXXXXXXXXXXXXXXXXXXXXXXXRVERLXXXXXXXXXXXXXCCMCHAVKRLFCGMG 60
MQYG RVERL CCMCHAVKRLFCGMG
Sbjct: 1 MQYGAAAEQAWYMPAAAPAPMVESAVARVERLASESAVVVFSVSSCCMCHAVKRLFCGMG 60
Query: 61 VHPTVHELDLDPRGXXXXXXXXXXXXXXXXXXXXXXXXXXXFIGGKLVGAMDRVMAAHIN 120
VHPTVHELDLDPRG FIGGKLVGAMDRVMAAHIN
Sbjct: 61 VHPTVHELDLDPRGRELERALARLVGYGGPAAASPPVVPVVFIGGKLVGAMDRVMAAHIN 120
Query: 121 GSLVPLLKEAGALWL 135
GSLVPLLKEAGALWL
Sbjct: 121 GSLVPLLKEAGALWL 135
>Os04g0393500 Glutaredoxin-like, plant II family protein
Length = 135
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/90 (68%), Positives = 62/90 (68%), Gaps = 3/90 (3%)
Query: 46 CCMCHAVKRLFCGMGVHPTVHELDLDPRGXXXXXXXXXXXXXXXXXXXXXXXXXXXFIGG 105
CCMCHAVKRLFCGMGVHP VHELDLDPRG FIGG
Sbjct: 49 CCMCHAVKRLFCGMGVHPAVHELDLDPRG---RDLERALARLVGAGGAAAAAVPVVFIGG 105
Query: 106 KLVGAMDRVMAAHINGSLVPLLKEAGALWL 135
KLVGAMDRVMAAHINGSLVPLLKEAGALWL
Sbjct: 106 KLVGAMDRVMAAHINGSLVPLLKEAGALWL 135
>Os12g0538600 Glutaredoxin-like, plant II family protein
Length = 103
Score = 83.6 bits (205), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 55/108 (50%), Gaps = 7/108 (6%)
Query: 28 RVERLXXXXXXXXXXXXXCCMCHAVKRLFCGMGVHPTVHELDLDPRGXXXXXXXXXXXXX 87
RV +L CCMCH V RLFC +GV+ VHELD DPRG
Sbjct: 3 RVMKLASERAVVIFTLSSCCMCHTVTRLFCDLGVNALVHELDQDPRG-------KEMERA 55
Query: 88 XXXXXXXXXXXXXXFIGGKLVGAMDRVMAAHINGSLVPLLKEAGALWL 135
FIGGKLVG +++M+ H+ G L+P+LK AGALWL
Sbjct: 56 LLKLLGRGPPVPVVFIGGKLVGGTNKIMSLHLGGELIPMLKNAGALWL 103
>Os01g0936000 Similar to AT.I.24-1 protein (Fragment)
Length = 125
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Query: 28 RVERLXXXXXXXXXXXXXCCMCHAVKRLFCGMGVHPTVHELDLDPRGXXXXXXXXXXXXX 87
RV RL C MCH VK LF +GV VHE+D DP G
Sbjct: 4 RVARLSSQRAVVIFGASNCFMCHVVKTLFSELGVSWAVHEVDKDPNGKDVERALAGMVGR 63
Query: 88 XXXXXXXXXXXXXXFIGGKLVGAMDRVMAAHINGSLVPLLKEAGALWL 135
FIGGKLVG D+VM+ H+ G LVPLL+EAGALWL
Sbjct: 64 TPPVPAV-------FIGGKLVGPTDQVMSLHLAGKLVPLLREAGALWL 104
>Os11g0655900 Glutaredoxin-like, plant II family protein
Length = 108
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Query: 28 RVERLXXXXXXXXXXXXXCCMCHAVKRLFCG-MGVHPTVHELDLDPRGXXXXXXXXXXXX 86
RV +L C MCHAV L G +GV+ VHELD DPRG
Sbjct: 3 RVAKLASERAVVVFTASNCGMCHAVTSLLVGELGVNAAVHELDKDPRGRDMERELARRLN 62
Query: 87 XXXXXXXXXXXXXXXFIGGKLVGAMDRVMAAHINGSLVPLLKEAGALWL 135
F+GG LVG +RVM+ H+ G LVP+LK AGALWL
Sbjct: 63 GGGGGGRALPAV---FVGGNLVGGANRVMSLHLAGELVPMLKNAGALWL 108
>Os11g0656000 Glutaredoxin-like, plant II family protein
Length = 109
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 29 VERLXXXXXXXXXXXXXCCMCHAVKRLFCGMGVHPTVHELDLDPRGXXXXXXXXXXXXXX 88
V RL CCMC AV L + V VHELD DP G
Sbjct: 5 VARLASERAVVVFTKSGCCMCTAVTTLLGELAVSAAVHELDRDPLGKEMEKELARRLYGS 64
Query: 89 XXXXXXXXXXXXXFIGGKLVGAMDRVMAAHINGSLVPLLKEAGALWL 135
FIGG LVG +VMA H+ G LVPLLK AGALWL
Sbjct: 65 SGRGGPAVPAV--FIGGSLVGGTSKVMAMHLKGELVPLLKSAGALWL 109
>Os11g0656801 Similar to Glutaredoxin
Length = 109
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 47/107 (43%), Gaps = 2/107 (1%)
Query: 29 VERLXXXXXXXXXXXXXCCMCHAVKRLFCGMGVHPTVHELDLDPRGXXXXXXXXXXXXXX 88
V RL CCMC AV L + V VHELD +P G
Sbjct: 5 VARLASERAVVVFTKSGCCMCTAVTTLLGELAVSAAVHELDREPLGKEMERELARRLYGS 64
Query: 89 XXXXXXXXXXXXXFIGGKLVGAMDRVMAAHINGSLVPLLKEAGALWL 135
FIGG LVG+ +VMA H+ G LVP+LK AGALWL
Sbjct: 65 GGRGGPAVPAV--FIGGSLVGSTSKVMAMHLKGELVPMLKNAGALWL 109
>Os11g0656400
Length = 109
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Query: 29 VERLXXXXXXXXXXXXXCCMCHAVKRLFCGMGVHPTVHELDLDPRGXXXXXXXXXXXXXX 88
V RL CCMC AV L + V VHELD +P G
Sbjct: 5 VARLASERAVVVFTKSGCCMCTAVTTLLGELAVSAAVHELDREPLGKEMERELARRLYGS 64
Query: 89 XXXXXXXXXXXXXFIGGKLVGAMDRVMAAHINGSLVPLLKEAGALWL 135
FIGG LVG +VM H+ G LVP+LK AGALWL
Sbjct: 65 GGRGGPAVPAV--FIGGSLVGGTSKVMTVHLKGELVPMLKSAGALWL 109
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.330 0.145 0.485
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,442,942
Number of extensions: 48424
Number of successful extensions: 181
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 8
Length of query: 135
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 45
Effective length of database: 12,336,541
Effective search space: 555144345
Effective search space used: 555144345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 150 (62.4 bits)