BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0321500 Os02g0321500|AK064540
(261 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0321500 Phosphatidylinositol transfer protein-like, N-... 440 e-124
Os01g0926800 Phosphatidylinositol transfer protein-like, N-... 98 7e-21
Os02g0752000 Cellular retinaldehyde-binding/triple function... 82 3e-16
Os03g0850700 Similar to Phosphatidylinositol phosphatidylch... 81 6e-16
Os01g0264700 Cellular retinaldehyde binding/alpha-tocophero... 72 5e-13
Os03g0724100 Cellular retinaldehyde binding/alpha-tocophero... 69 3e-12
>Os02g0321500 Phosphatidylinositol transfer protein-like, N-terminal domain
containing protein
Length = 261
Score = 440 bits (1131), Expect = e-124, Method: Compositional matrix adjust.
Identities = 220/261 (84%), Positives = 220/261 (84%)
Query: 1 MAAACSFRSVXXXXXXXXXXXXXXVVHCCXXXXXXXXXXXXXXXXXXXXXXXXXXXHPGL 60
MAAACSFRSV VVHCC HPGL
Sbjct: 1 MAAACSFRSVARAPPPLRGLARRGVVHCCSTAPPSGGTSTSSSKLVLEVKERLEREHPGL 60
Query: 61 PTGRNGRDDEEMILWFLKDRKLSVDETVSKLTKAIKWRQDFQVSELSEESVKGLYQTGKA 120
PTGRNGRDDEEMILWFLKDRKLSVDETVSKLTKAIKWRQDFQVSELSEESVKGLYQTGKA
Sbjct: 61 PTGRNGRDDEEMILWFLKDRKLSVDETVSKLTKAIKWRQDFQVSELSEESVKGLYQTGKA 120
Query: 121 YVHDSFDIYGRPVLVVVASKHFPSKQDPVENEKLCAFLVEKALSRLPLGTENILGIFDLR 180
YVHDSFDIYGRPVLVVVASKHFPSKQDPVENEKLCAFLVEKALSRLPLGTENILGIFDLR
Sbjct: 121 YVHDSFDIYGRPVLVVVASKHFPSKQDPVENEKLCAFLVEKALSRLPLGTENILGIFDLR 180
Query: 181 GFQVENGDLQFLKFLIDVFYYYYPKRLGQVLFVDAPFVFQPMWQLVKPLLKQYASLVRFC 240
GFQVENGDLQFLKFLIDVFYYYYPKRLGQVLFVDAPFVFQPMWQLVKPLLKQYASLVRFC
Sbjct: 181 GFQVENGDLQFLKFLIDVFYYYYPKRLGQVLFVDAPFVFQPMWQLVKPLLKQYASLVRFC 240
Query: 241 DVETVRKEYFTKETVPPDFRN 261
DVETVRKEYFTKETVPPDFRN
Sbjct: 241 DVETVRKEYFTKETVPPDFRN 261
>Os01g0926800 Phosphatidylinositol transfer protein-like, N-terminal domain
containing protein
Length = 247
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 89/156 (57%), Gaps = 2/156 (1%)
Query: 76 FLKDRKLSVDETVSKLTKAIKWRQD-FQVSELSEESVKGLYQTGKAYVHDSFDIYGRPVL 134
FL+ R +V++ + L KA++WR++ + EE V+ K Y+ + D GRP+L
Sbjct: 42 FLRARDHNVEKASAMLLKALRWRREAVPGGSVPEEKVQSDLDDDKVYMGGA-DRTGRPIL 100
Query: 135 VVVASKHFPSKQDPVENEKLCAFLVEKALSRLPLGTENILGIFDLRGFQVENGDLQFLKF 194
+ +KHF +K+D + + C +L++ +R+P G E + I DL+G+ N D++
Sbjct: 101 LAFPAKHFSAKRDMPKFKSYCVYLLDSICARIPRGQEKFVCIVDLKGWGYSNCDIRAYIA 160
Query: 195 LIDVFYYYYPKRLGQVLFVDAPFVFQPMWQLVKPLL 230
I++ YYP+RLG+ L + P++F W+++ P +
Sbjct: 161 AIEIMQNYYPERLGKALMIHVPYMFMKAWKMIYPFI 196
>Os02g0752000 Cellular retinaldehyde-binding/triple function, N-terminal domain
containing protein
Length = 378
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 8/162 (4%)
Query: 73 ILWFLKDRKLSVDETVSKLTKAIKWRQDFQVSELSEESVKGLYQTGKAYVHDSFDIYGRP 132
I +L R V + L K +KWR +++ E+ + + TGK Y D FD GR
Sbjct: 48 IARYLVARNWEVKKATKMLKKTLKWRSEYKPDEIRWDEIANEAATGKIYRTDYFDKSGRS 107
Query: 133 VLVVVASKHFPSKQDPVENEKLCAFLV---EKALSRLPLGTENILGIFDLRGFQVENGDL 189
+LV+ P Q+ + + +LV E A+ LP ++ + D GF + N L
Sbjct: 108 ILVM-----RPGVQNTKKAKGQIRYLVYCMENAILNLPHDQSQMVWLIDFAGFSLSNISL 162
Query: 190 QFLKFLIDVFYYYYPKRLGQVLFVDAPFVFQPMWQLVKPLLK 231
K DV +YP+RLG + +AP F+ W++ P+L+
Sbjct: 163 HVTKLTADVLQGHYPERLGVAILYNAPKFFESFWKIASPILE 204
>Os03g0850700 Similar to Phosphatidylinositol phosphatidylcholine transfer
protein sec14 cytosolic-like protein
Length = 261
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 93/168 (55%), Gaps = 6/168 (3%)
Query: 68 DDEEMILWFLKDRKLSVDETVSKLTKAIKWRQDFQVS--ELSEESVKGLYQTGKAYVHDS 125
+D+ + FL+ R ++ + + L K ++W+++ + +++E V+G K Y+
Sbjct: 41 EDDYQLRRFLRARDHNIGKASAMLVKYLQWKREVKPGGRAIADEEVRGELAQEKLYMQ-G 99
Query: 126 FDIYGRPVLVVVASKHFPSKQDPVENEKLCAFLVEKALSRLPL--GTENILGIFDLRGFQ 183
+D GRP++ ++HFP+++D E ++ +++++ +RL G E + DL+G+
Sbjct: 100 YDRQGRPLVYGFGARHFPARRDLDEFKRYVVYVLDRTCARLGGNGGQEKFAAVADLQGWG 159
Query: 184 V-ENGDLQFLKFLIDVFYYYYPKRLGQVLFVDAPFVFQPMWQLVKPLL 230
N D++ +++ YYP+RLG+V + P+VF W+++ P +
Sbjct: 160 YYGNCDIRAYVAALEIMQNYYPERLGRVFLIHVPYVFMAAWKIIYPFI 207
>Os01g0264700 Cellular retinaldehyde binding/alpha-tocopherol transport family
protein
Length = 311
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 8/160 (5%)
Query: 74 LWFLKDRKLSVDETVSKLTKAIKWRQDFQVSELSEESVKGLYQTGKAYVHDSFDIYGRPV 133
L FL+ R +V + + A+KWR + +++ + V +TGK Y D D +GR V
Sbjct: 51 LRFLRARNWNVQKASKMMKSAVKWRVSYMPQKINWDDVAHEAETGKIYRADYKDKHGRTV 110
Query: 134 LVVVASKHFPSKQDPVENEKLCAFLV---EKALSRLPLGTENILGIFDLRGFQVENGDLQ 190
LV+ P ++ + +LV EKA+ L E ++ + D + + + + L+
Sbjct: 111 LVLR-----PGLENTTSGKGQIKYLVYCLEKAIMSLTEDQEKMVWLTDFQSWTLGSTPLK 165
Query: 191 FLKFLIDVFYYYYPKRLGQVLFVDAPFVFQPMWQLVKPLL 230
+ ++V YP+RLG + + P +F+ W++VKP L
Sbjct: 166 VTRETVNVLQDCYPERLGLAILYNPPRIFESFWKIVKPFL 205
>Os03g0724100 Cellular retinaldehyde binding/alpha-tocopherol transport family
protein
Length = 299
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 95/194 (48%), Gaps = 15/194 (7%)
Query: 76 FLKDRKLSVDETVSKLTKAIKWRQDFQVSELSEESVKGLYQTGKAYVHDSFDIYGRPVLV 135
+L+ R +VD++ L +++KWR ++ ++ + +TGK Y D GR V++
Sbjct: 50 YLEARNWNVDKSRKMLEESLKWRTAYRPEDIRWPEISVESETGKMYRASFVDREGRTVVI 109
Query: 136 VVASKHFPSKQDPVENEKLCAFLV---EKALSRLPLGTENILGIFDLRGFQVENGD-LQF 191
+ P+KQ+ +E FLV E A+ LP E ++ + D G+ + N ++
Sbjct: 110 MR-----PAKQNTSSHEGQVRFLVYTLENAILSLPEDQEKMVWLIDFTGWTLANATPIKT 164
Query: 192 LKFLIDVFYYYYPKRLGQVLFVDAPFVFQPMWQLVKPLLK----QYASLVRFCDVETVR- 246
+ ++ +YP+RL + + P VF+ W++VK L Q + V + E+++
Sbjct: 165 ARECANILQNHYPERLAIGILFNPPKVFEAFWKVVKHFLDPKSIQKVNFVYLKNEESMKI 224
Query: 247 -KEYFTKETVPPDF 259
+Y E +P +F
Sbjct: 225 LHKYIDPEVLPVEF 238
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.141 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,343,687
Number of extensions: 264158
Number of successful extensions: 678
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 673
Number of HSP's successfully gapped: 6
Length of query: 261
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 162
Effective length of database: 11,866,615
Effective search space: 1922391630
Effective search space used: 1922391630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 155 (64.3 bits)