BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0219400 Os02g0219400|AK072526
(404 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0219400 Similar to Yarrowia lipolytica chromosome F of... 771 0.0
Os06g0105100 109 5e-24
Os01g0559600 Similar to C13 endopeptidase NP1 precursor 104 1e-22
Os05g0593900 Similar to C13 endopeptidase NP1 precursor 103 3e-22
Os04g0537900 Similar to C13 endopeptidase NP1 (Fragment) 94 2e-19
Os02g0644000 Similar to C13 endopeptidase NP1 (Fragment) 74 2e-13
>Os02g0219400 Similar to Yarrowia lipolytica chromosome F of strain CLIB99 of
Yarrowia lipolytica
Length = 404
Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/404 (92%), Positives = 375/404 (92%)
Query: 1 MASGRGGIPGPSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMHNNNWAVLVCTSRFWFN 60
MASGRGGIPGPSR MHNNNWAVLVCTSRFWFN
Sbjct: 1 MASGRGGIPGPSRALLVLLLPALLMLLAFSTSSSAAASSPGAMHNNNWAVLVCTSRFWFN 60
Query: 61 YRHMANTLSLYRTVKRLGIPDERIILMLADDMACNPRNNYPAQVFNNENHQLNLYGDNVE 120
YRHMANTLSLYRTVKRLGIPDERIILMLADDMACNPRNNYPAQVFNNENHQLNLYGDNVE
Sbjct: 61 YRHMANTLSLYRTVKRLGIPDERIILMLADDMACNPRNNYPAQVFNNENHQLNLYGDNVE 120
Query: 121 VDYRGYEVTVENFLRVLTGRHESAVPRSKRLLSDEGSHILLYMTGHGGDEFLKFQDSEEL 180
VDYRGYEVTVENFLRVLTGRHESAVPRSKRLLSDEGSHILLYMTGHGGDEFLKFQDSEEL
Sbjct: 121 VDYRGYEVTVENFLRVLTGRHESAVPRSKRLLSDEGSHILLYMTGHGGDEFLKFQDSEEL 180
Query: 181 QSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQLQSPGVLTIGSSMKGENSYSHHLD 240
QSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQLQSPGVLTIGSSMKGENSYSHHLD
Sbjct: 181 QSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQLQSPGVLTIGSSMKGENSYSHHLD 240
Query: 241 SDIGVSVVDRFTFYTLAFFEKLNMYSNASLNSLFNSYNPSMLLSTAYYRMDLYERPLNEV 300
SDIGVSVVDRFTFYTLAFFEKLNMYSNASLNSLFNSYNPSMLLSTAYYRMDLYERPLNEV
Sbjct: 241 SDIGVSVVDRFTFYTLAFFEKLNMYSNASLNSLFNSYNPSMLLSTAYYRMDLYERPLNEV 300
Query: 301 PVTNFFGSVMNTIHTDSAYSGFLAADDIGTIPSTGDNLLNHAVLQNKASQRRSNIEEVKE 360
PVTNFFGSVMNTIHTDSAYSGFLAADDIGTIPSTGDNLLNHAVLQNKASQRRSNIEEVKE
Sbjct: 301 PVTNFFGSVMNTIHTDSAYSGFLAADDIGTIPSTGDNLLNHAVLQNKASQRRSNIEEVKE 360
Query: 361 AQVRSHGWTDVLLEQLDVKNADTIVMYGLGTMGILLAISTWLSM 404
AQVRSHGWTDVLLEQLDVKNADTIVMYGLGTMGILLAISTWLSM
Sbjct: 361 AQVRSHGWTDVLLEQLDVKNADTIVMYGLGTMGILLAISTWLSM 404
>Os06g0105100
Length = 452
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 104/199 (52%), Gaps = 7/199 (3%)
Query: 48 WAVLVCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNPRNNYPAQVFNN 107
WA+L+ S+ + NYRH A+ Y+ +K+ G+ D+ I++M+ DD+A NP N + + N
Sbjct: 42 WALLIAGSKGYENYRHQADVCHAYQIMKKGGLKDQNIVVMMYDDIAYNPENPHKGVIINK 101
Query: 108 ENHQLNLYGDNVEVDYRGYEVTVENFLRVLTGRHES--AVPRSKRLLSDEGSHILLYMTG 165
N N+Y V DY G +V NFL VL G+ + K + S HI +Y +
Sbjct: 102 PNGP-NVYA-GVPKDYNGNDVNKNNFLAVLLGKKSALTGAGSGKVISSGPNDHIFVYYSD 159
Query: 166 HGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQLQSP---GV 222
HG ++ L ++DL+ A+K +K L++ V+ C++ ++F P GV
Sbjct: 160 HGSPGYVCMPSGGNLHANDLSQALKNKNAAGAYKNLVVYVEACESGSMFEGQLLPSNIGV 219
Query: 223 LTIGSSMKGENSYSHHLDS 241
+ +S ENS++ + D+
Sbjct: 220 YAMTASNATENSWATYCDT 238
>Os01g0559600 Similar to C13 endopeptidase NP1 precursor
Length = 501
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 114/238 (47%), Gaps = 10/238 (4%)
Query: 48 WAVLVCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNPRNNYPAQVFNN 107
WAVL+ S ++NYRH A+ Y+ +KR G+ DE II+ + DD+A NP N P + N+
Sbjct: 66 WAVLIAGSNGYYNYRHQADVCHAYQIMKRGGLKDENIIVFMYDDIAHNPENPRPGVIINH 125
Query: 108 ENHQLNLYGDNVEVDYRGYEVTVENFLRVLTGRHESAVPRSKRLL-SDEGSHILLYMTGH 166
++Y V DY G EV V+N VL G + S ++L S HI ++ + H
Sbjct: 126 PQGG-DVYA-GVPKDYTGKEVNVKNLFAVLLGNKTAVKGGSGKVLDSGPNDHIFIFYSDH 183
Query: 167 GGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQLQSPG--VLT 224
GG L L DL D +K+ +K L+ ++ C++ ++F L G V
Sbjct: 184 GGPGVLGMPTYPYLYGDDLVDVLKKKHAAGTYKSLVFYLEACESGSIFEGLLPNGINVYA 243
Query: 225 IGSSMKGENSYSHHLDSDIGVSVVDRFT----FYTLAFFEKLNMYSNASLNSLFNSYN 278
+S E+S+ + + + T Y++A+ E +++ N SL YN
Sbjct: 244 TTASNADESSWGTYCPGEYPSPPPEYDTCLGDLYSVAWMEDSDVH-NLRTESLKQQYN 300
>Os05g0593900 Similar to C13 endopeptidase NP1 precursor
Length = 474
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 97/174 (55%), Gaps = 7/174 (4%)
Query: 48 WAVLVCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNPRNNYPAQVFNN 107
WAVL+ S ++NYRH A+ Y+ +++ G+ ++ I++M+ DD+A NP N P +FN+
Sbjct: 42 WAVLIAGSNGFYNYRHQADVCHAYQIMRKGGVEEQNIVVMMYDDIAHNPDNPRPGLIFNH 101
Query: 108 ENHQLNLYGDNVEVDYRGYEVTVENFLRVLTGRHESAVPRS---KRLLSDEGSHILLYMT 164
+ ++Y V DY G +V V NFL VL G + SA+ S K + S H+ +Y
Sbjct: 102 PSGP-DVYA-GVPKDYTGDDVNVNNFLAVLLG-NRSALTGSGSGKVVASGPNDHVFVYYA 158
Query: 165 GHGGDEFLKF-QDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQL 217
HGG L D E L + DL A+K+ +K L++ V+ C++ ++F L
Sbjct: 159 DHGGPGVLSMPADGEYLYADDLVKALKKKHAGGGYKSLVVYVEACESGSIFEGL 212
>Os04g0537900 Similar to C13 endopeptidase NP1 (Fragment)
Length = 497
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 90/171 (52%), Gaps = 3/171 (1%)
Query: 48 WAVLVCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNPRNNYPAQVFNN 107
WAVLV S + NYRH A+ Y+ +++ G+ +E I++ + DD+A N N P + N+
Sbjct: 63 WAVLVAGSSGYGNYRHQADVCHAYQILQKGGVKEENIVVFMYDDIAHNILNPRPGTIINH 122
Query: 108 ENHQLNLYGDNVEVDYRGYEVTVENFLRVLTGRHESAVPRSKRLL-SDEGSHILLYMTGH 166
++Y V DY G++VT ENF VL G + S +++ S HI +Y + H
Sbjct: 123 PKGG-DVYA-GVPKDYTGHQVTTENFFAVLLGNKTAVTGGSGKVIDSKPEDHIFIYYSDH 180
Query: 167 GGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQL 217
GG L + L + D +++ + + +++I V+ C++ ++F L
Sbjct: 181 GGPGVLGMPNLPYLYAGDFIKVLQKKHASNSYSKMVIYVEACESGSIFEGL 231
>Os02g0644000 Similar to C13 endopeptidase NP1 (Fragment)
Length = 446
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 88/170 (51%), Gaps = 15/170 (8%)
Query: 52 VCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNPRNNYPAQVFNNENHQ 111
+C + W A+ Y+ +++ G+ +E I++ + DD+A N N P + N+ +
Sbjct: 23 LCRTPIW------ADVCHAYQILRKGGLKEENIVVFMYDDIANNILNPRPGVIVNHPQGE 76
Query: 112 LNLYGDNVEVDYRGYEVTVENFLRVLTGRHESAVPRSKRLL-SDEGSHILLYMTGHGGDE 170
++Y V DY G EVT +NF VL G + S++++ S HI ++ + HGG
Sbjct: 77 -DVYA-GVPKDYTGDEVTAKNFYAVLLGNKTAVTGGSRKVIDSKPNDHIFIFYSDHGGPG 134
Query: 171 FLKFQDSEELQSHDLADAVKQMKEKH---RFKELLIMVDTCQAATLFSQL 217
L + L + AD +K ++EKH + +++I V+ C++ ++F L
Sbjct: 135 VLGMPNLPYLYA---ADFMKVLQEKHASNTYAKMVIYVEACESGSIFEGL 181
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,284,547
Number of extensions: 464449
Number of successful extensions: 1030
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1019
Number of HSP's successfully gapped: 6
Length of query: 404
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 301
Effective length of database: 11,657,759
Effective search space: 3508985459
Effective search space used: 3508985459
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)