Os02g0219400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Yarrowia lipolytica chromosome F of strain CLIB99 of Yarrowia lipolytica.
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Os02g0219400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Yarrowia lipolytica chromosome F of strain CLIB99 of Yarrowia lipolytica.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.81 | 0.369 | 9.25 | -0.95 | 0.276 | -0.904 | 0.148 | 0.638 | 0.0234 | 14.6 | 28.7 | 4770 | -- | -- |
| 61.96 | 0.367 | 9.24 | -0.804 | 0.272 | -0.854 | 0.14 | -- | 0.0369 | 14.6 | 28.4 | 4766 | -- | -- |
| 61.89 | 0.366 | 9.25 | -0.949 | 0.277 | -0.901 | -- | 0.647 | 0.024 | 14.6 | 28.7 | 4758 | -- | -- |
| 62.02 | 0.367 | 9.24 | -0.793 | 0.276 | -0.847 | -- | -- | 0.0448 | 14.6 | 28.6 | 4769 | -- | -- |
| 66.3 | 0.379 | 9.26 | -1.05 | -- | -0.951 | -- | 1.01 | -0.00399 | -- | 28.7 | 4781 | -- | -- |
| 86.99 | 0.437 | 9.22 | -0.532 | 0.297 | -- | 0.09 | -- | 0.115 | 15.4 | -- | -- | -- | -- |
| 87.02 | 0.437 | 9.22 | -0.53 | 0.297 | -- | -- | -- | 0.115 | 15.4 | -- | -- | -- | -- |
| 66.49 | 0.38 | 9.24 | -0.811 | -- | -0.862 | -- | -- | 0.032 | -- | 28.45 | 4790 | -- | -- |
| 77.2 | 0.409 | 9.22 | -- | 0.311 | -0.681 | -- | -- | 0.167 | 14.8 | 28.7 | 4799 | -- | -- |
| 91.98 | 0.448 | 9.22 | -0.543 | -- | -- | -- | -- | 0.107 | -- | -- | -- | -- | -- |
| 94.43 | 0.455 | 9.21 | -- | 0.307 | -- | -- | -- | 0.174 | 15.4 | -- | -- | -- | -- |
| 82.25 | 0.422 | 9.21 | -- | -- | -0.68 | -- | -- | 0.146 | -- | 28.79 | 4810 | -- | -- |
| 99.75 | 0.466 | 9.21 | -- | -- | -- | -- | -- | 0.168 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.84 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 2 | 58.84 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 12 |
| 4 | 58.90 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 8 | 58.95 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 9 | 59.00 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 11 | 59.06 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 5 |
| 26 | 59.29 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 8 |
| 31 | 59.47 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 54 | 60.06 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 56 | 60.13 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 64 | 60.24 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 65 | 60.25 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 68 | 60.33 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 75 | 60.41 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 81 | 60.60 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 104 | 61.11 | temperature | 20.0 | 720 | > th | dose dependent | sin | 3 | NA |
| 105 | 61.15 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 108 | 61.20 | wind | 7.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 112 | 61.22 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 118 | 61.29 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 119 | 61.31 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 127 | 61.37 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 14 | 2 |
| 132 | 61.40 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 16 |
| 136 | 61.42 | temperature | 10.0 | 720 | > th | dose dependent | sin | 2 | NA |
| 146 | 61.49 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 148 | 61.51 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 3 | 16 |
| 149 | 61.52 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 167 | 61.60 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 185 | 61.71 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 6 | 9 |
| 206 | 61.79 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 213 | 61.80 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 7 | 9 |
| 230 | 61.84 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 1 | 22 |
| 233 | 61.85 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 236 | 61.86 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 244 | 61.91 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 18 | 2 |
| 251 | 61.94 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 286 | 62.04 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 309 | 62.11 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 313 | 62.13 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 316 | 62.13 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 343 | 62.19 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 381 | 62.28 | wind | 7.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 406 | 62.34 | wind | 9.0 | 43200 | > th | dose dependent | sin | 12 | NA |
| 513 | 62.54 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 515 | 62.54 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 522 | 62.55 | temperature | 10.0 | 90 | > th | dose dependent | no | NA | NA |
| 538 | 62.60 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 551 | 62.62 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 632 | 62.76 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 648 | 62.80 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 694 | 62.85 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 701 | 62.87 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 731 | 62.90 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 752 | 62.94 | temperature | 25.0 | 720 | > th | dose dependent | sin | 7 | NA |
| 763 | 62.95 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 785 | 62.98 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 0 | NA |
| 820 | 63.02 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 0 | NA |
| 838 | 63.03 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 867 | 63.07 | temperature | 20.0 | 4320 | > th | dose dependent | sin | 17 | NA |
| 903 | 63.11 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 2 | 18 |
| 915 | 63.13 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 2 | 9 |
| 929 | 63.14 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 4 | 7 |
| 939 | 63.15 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 964 | 63.17 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 17 | 16 |
| 965 | 63.17 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 17 | 16 |
| 967 | 63.18 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 8 | 3 |
| 969 | 63.18 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 20 | 15 |
| 971 | 63.18 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 982 | 63.19 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 22 | 13 |
| 986 | 63.19 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 6 | 3 |