BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0219400 Os02g0219400|AK072526
(404 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G08750.1 | chr1:2801283-2804392 FORWARD LENGTH=389 541 e-154
AT2G25940.1 | chr2:11063496-11066020 REVERSE LENGTH=479 103 2e-22
AT1G62710.1 | chr1:23224070-23226857 REVERSE LENGTH=487 98 7e-21
AT4G32940.1 | chr4:15900557-15903161 REVERSE LENGTH=495 95 5e-20
AT3G20210.1 | chr3:7052482-7054525 FORWARD LENGTH=467 93 2e-19
>AT1G08750.1 | chr1:2801283-2804392 FORWARD LENGTH=389
Length = 388
Score = 541 bits (1395), Expect = e-154, Method: Compositional matrix adjust.
Identities = 268/364 (73%), Positives = 298/364 (81%), Gaps = 4/364 (1%)
Query: 43 MHNNNWAVLVCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNPRNNYPA 102
+H NNWAVLVCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACN RN YPA
Sbjct: 23 IHTNNWAVLVCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNARNEYPA 82
Query: 103 QVFNNENHQLNLYGDNVEVDYRGYEVTVENFLRVLTGRHESAVPRSKRLLSDEGSHILLY 162
QVFNNENH+LNLYGDNVEVDYRGYEVTVENFLRVLTGRHE+AVPRSKRLLSDEGSHILLY
Sbjct: 83 QVFNNENHKLNLYGDNVEVDYRGYEVTVENFLRVLTGRHENAVPRSKRLLSDEGSHILLY 142
Query: 163 MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQLQSPGV 222
MTGHGGDEFLKFQD+EELQSHDLADAVKQMKEK RFKEL+IMVDTCQAATLF+QLQSPGV
Sbjct: 143 MTGHGGDEFLKFQDAEELQSHDLADAVKQMKEKRRFKELMIMVDTCQAATLFNQLQSPGV 202
Query: 223 LTIGSSMKGENSYSHHLDSDIGVSVVDRFTFYTLAFFEKLNMYSNASLNSLFNSYNPSML 282
L IGSS+KGENSYSHHLDSDIGVSVVDRFT+YTLAFFE+LN+Y NASLNSLF SY+P +L
Sbjct: 203 LAIGSSLKGENSYSHHLDSDIGVSVVDRFTYYTLAFFERLNIYDNASLNSLFRSYDPRLL 262
Query: 283 LSTAYYRMDLYERPLNEVPVTNFFGSVMNTIHTDSAYSGFLAADDIGTIPSTG--DNLLN 340
+STAYYR DLY+ L EVPVTNFFGSVM TIHTDSAY F + I S + L
Sbjct: 263 MSTAYYRTDLYQPHLVEVPVTNFFGSVMETIHTDSAYKAFSSKISERKINSEMPFNQLSE 322
Query: 341 HAVLQNKASQRRSNIEEVKEAQV--RSHGWTDVLLEQLDVKNADTIVMYGLGTMGILLAI 398
H + + + N E + E Q S D+ + ++N DT+V + M + + +
Sbjct: 323 HDLKEELENTNIPNDELIAEKQKCPYSQMRADLHEKVEKLENVDTVVNLSIAVMVLAVMV 382
Query: 399 STWL 402
S+ L
Sbjct: 383 SSSL 386
>AT2G25940.1 | chr2:11063496-11066020 REVERSE LENGTH=479
Length = 478
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 96/176 (54%), Gaps = 3/176 (1%)
Query: 48 WAVLVCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNPRNNYPAQVFNN 107
WAVLV S ++NYRH A+ Y+ +K+ G+ +E I++ + DD+A N N P + N+
Sbjct: 45 WAVLVAGSSGYWNYRHQADVCHAYQLLKKGGVKEENIVVFMYDDIAKNEENPRPGVIINS 104
Query: 108 ENHQLNLYGDNVEVDYRGYEVTVENFLRVLTGRHESAVPRSKRLL-SDEGSHILLYMTGH 166
N + ++Y + V DY G EV V+N L V+ G + S +++ S HI +Y + H
Sbjct: 105 PNGE-DVY-NGVPKDYTGDEVNVDNLLAVILGNKTALKGGSGKVVDSGPNDHIFIYYSDH 162
Query: 167 GGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQLQSPGV 222
GG L S L ++DL D +K+ +K L+ ++ C++ ++F L G+
Sbjct: 163 GGPGVLGMPTSPNLYANDLNDVLKKKYASGTYKSLVFYLEACESGSIFEGLLPEGL 218
>AT1G62710.1 | chr1:23224070-23226857 REVERSE LENGTH=487
Length = 486
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 92/171 (53%), Gaps = 3/171 (1%)
Query: 48 WAVLVCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNPRNNYPAQVFNN 107
WAVLV S + NYRH A+ Y+ +++ G+ +E I++++ DD+A +P N P + N+
Sbjct: 52 WAVLVAGSSGYGNYRHQADVCHAYQILRKGGLKEENIVVLMYDDIANHPLNPRPGTLINH 111
Query: 108 ENHQLNLYGDNVEVDYRGYEVTVENFLRVLTGRHESAVPRSKRLL-SDEGSHILLYMTGH 166
+ ++Y V DY G VT NF VL G ++ S +++ S HI +Y H
Sbjct: 112 PDGD-DVYA-GVPKDYTGSSVTAANFYAVLLGDQKAVKGGSGKVIASKPNDHIFVYYADH 169
Query: 167 GGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQL 217
GG L ++ + + D + +K+ +KE++I V+ C++ ++F +
Sbjct: 170 GGPGVLGMPNTPHIYAADFIETLKKKHASGTYKEMVIYVEACESGSIFEGI 220
>AT4G32940.1 | chr4:15900557-15903161 REVERSE LENGTH=495
Length = 494
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 93/176 (52%), Gaps = 3/176 (1%)
Query: 48 WAVLVCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNPRNNYPAQVFNN 107
WAVLV S ++NYRH A+ Y+ +++ G+ +E I++ + DD+A N N P + N+
Sbjct: 60 WAVLVAGSSGYWNYRHQADICHAYQLLRKGGLKEENIVVFMYDDIANNYENPRPGTIINS 119
Query: 108 ENHQLNLYGDNVEVDYRGYEVTVENFLRVLTGRHESAVPRSKRLL-SDEGSHILLYMTGH 166
H ++Y V DY G +V V+N V+ G + S +++ S HI ++ + H
Sbjct: 120 P-HGKDVY-QGVPKDYTGDDVNVDNLFAVILGDKTAVKGGSGKVVDSGPNDHIFIFYSDH 177
Query: 167 GGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFSQLQSPGV 222
GG L S L ++DL D +K+ +K L+ ++ C++ ++F L G+
Sbjct: 178 GGPGVLGMPTSPYLYANDLNDVLKKKHALGTYKSLVFYLEACESGSIFEGLLPEGL 233
>AT3G20210.1 | chr3:7052482-7054525 FORWARD LENGTH=467
Length = 466
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 92/169 (54%), Gaps = 5/169 (2%)
Query: 48 WAVLVCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNPRNNYPAQVFNN 107
WAVLV S ++NYRH A+ Y+ +++ G+ DE II+ + DD+A + N P + N
Sbjct: 47 WAVLVAGSNEYYNYRHQADICHAYQILRKGGLKDENIIVFMYDDIAFSSENPRPGVIINK 106
Query: 108 ENHQLNLYGDNVEVDYRGYEVTVENFLRVLTGRHESAVP--RSKRLLSDEGSHILLYMTG 165
+ + ++Y V DY V V+NF VL G +ES V K + S +I +Y
Sbjct: 107 PDGE-DVY-KGVPKDYTKEAVNVQNFYNVLLG-NESGVTGGNGKVVKSGPNDNIFIYYAD 163
Query: 166 HGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLF 214
HG + +E+ + D + +++M ++ ++ +++I V+ C++ ++F
Sbjct: 164 HGAPGLIAMPTGDEVMAKDFNEVLEKMHKRKKYNKMVIYVEACESGSMF 212
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,102,731
Number of extensions: 324047
Number of successful extensions: 867
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 860
Number of HSP's successfully gapped: 5
Length of query: 404
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 303
Effective length of database: 8,337,553
Effective search space: 2526278559
Effective search space used: 2526278559
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)