FiT-DB / Search/ Help/ Sample detail

Os04g0537900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to C13 endopeptidase NP1 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.3 (0.0199) R2 : 0.0547
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.215 (0.0419) R2dN8 : 0.0707 R2N8 : 0.0547
σ : 0.375
deviance : 64.42
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.09 0.27 10.4 -0.622 0.446 -2.53 0.0823 -6.09 0.155 9.33 8.4 266 -- --
33.78 0.271 10.3 -0.679 0.484 -1.06 0.0344 -- 0.155 9.38 8.561 539 -- --
33.12 0.268 10.4 -0.618 0.446 -2.55 -- -6.16 0.155 9.33 8.4 266 -- --
33.64 0.27 10.3 -0.673 0.464 -1.1 -- -- 0.163 9.49 8.6 535 -- --
44.6 0.311 10.4 -0.648 -- -2.44 -- -5.93 0.152 -- 8.502 243 -- --
38.02 0.289 10.4 -0.77 0.427 -- 0.185 -- 0.129 9.66 -- -- -- --
38.15 0.289 10.4 -0.763 0.425 -- -- -- 0.129 9.69 -- -- -- --
45.74 0.315 10.4 -0.696 -- -0.984 -- -- 0.158 -- 8.8 266 -- --
44.55 0.311 10.3 -- 0.481 -1.23 -- -- 0.27 9.53 8 569 -- --
48.9 0.327 10.4 -0.767 -- -- -- -- 0.13 -- -- -- -- --
53.51 0.342 10.3 -- 0.427 -- -- -- 0.214 9.83 -- -- -- --
57.6 0.353 10.3 -- -- -1.2 -- -- 0.241 -- 8.4 243 -- --
64.42 0.375 10.3 -- -- -- -- -- 0.215 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 32.45 radiation 1.0 4320 < th dose dependent rect. 4 1
4 32.62 wind 1.0 43200 < th dose independent rect. 22 10
5 32.62 radiation 1.0 4320 < th dose dependent rect. 19 10
6 32.62 wind 9.0 720 > th dose dependent rect. 22 18
12 32.67 wind 1.0 43200 < th dose independent rect. 17 15
13 32.67 wind 9.0 720 > th dose dependent rect. 12 4
14 32.67 radiation 1.0 4320 < th dose dependent rect. 22 7
16 32.68 radiation 1.0 4320 > th dose independent rect. 18 1
27 32.68 wind 9.0 720 > th dose dependent rect. 1 15
30 32.71 wind 9.0 720 > th dose dependent rect. 9 7
39 32.75 wind 1.0 14400 > th dose independent rect. 2 1
41 32.78 wind 1.0 43200 > th dose independent rect. 22 10
47 32.84 wind 9.0 720 > th dose dependent rect. 15 1
48 32.85 wind 9.0 720 > th dose independent rect. 12 4
63 32.89 wind 9.0 270 > th dose dependent sin 10 NA
70 32.96 wind 1.0 43200 > th dose independent rect. 17 15
73 32.98 wind 9.0 720 > th dose dependent sin 5 NA
79 33.01 wind 9.0 720 > th dose independent rect. 22 18
93 33.05 wind 7.0 720 > th dose dependent rect. 22 15
97 33.08 wind 1.0 43200 < th dose independent rect. 2 1
102 33.10 wind 9.0 720 > th dose independent rect. 1 15
110 33.14 wind 9.0 720 > th dose independent rect. 9 7
120 33.17 wind 1.0 43200 < th dose independent rect. 2 3
139 33.21 humidity 90.0 14400 > th dose independent rect. 5 1
144 33.21 wind 9.0 270 > th dose dependent rect. 11 23
162 33.25 wind 9.0 720 > th dose independent rect. 12 1
169 33.27 wind 9.0 270 > th dose independent rect. 11 23
176 33.29 wind 7.0 720 > th dose dependent rect. 1 12
185 33.33 wind 9.0 270 > th dose independent sin 10 NA
197 33.35 wind 1.0 43200 < th dose independent rect. 2 7
203 33.36 precipitation 0.1 43200 > th dose dependent rect. 13 6
204 33.36 wind 9.0 270 > th dose dependent rect. 11 15
213 33.37 wind 9.0 270 > th dose independent rect. 11 12
224 33.37 wind 1.0 43200 < th dose dependent rect. 2 1
226 33.37 wind 9.0 270 > th dose dependent rect. 11 12
231 33.38 wind 9.0 720 > th dose independent sin 3 NA
232 33.38 wind 7.0 720 > th dose independent sin 5 NA
260 33.40 precipitation 0.1 43200 < th dose independent rect. 15 5
263 33.40 precipitation 0.1 43200 < th dose dependent rect. 15 5
266 33.41 precipitation 0.1 43200 > th dose independent rect. 15 5
275 33.43 wind 7.0 720 < th dose independent rect. 21 16
283 33.44 precipitation 0.1 43200 > th dose independent rect. 13 7
284 33.44 wind 1.0 43200 < th dose dependent rect. 5 2
290 33.45 precipitation 0.1 43200 < th dose independent rect. 13 7
294 33.45 precipitation 0.1 43200 < th dose dependent rect. 13 7
298 33.46 humidity 90.0 14400 < th dose independent rect. 5 1
311 33.47 wind 1.0 43200 < th dose dependent rect. 4 5
312 33.47 wind 1.0 43200 < th dose dependent rect. 2 7
323 33.49 wind 1.0 43200 > th dose independent rect. 5 3
326 33.49 wind 1.0 43200 > th dose independent rect. 2 7
363 33.51 wind 9.0 270 > th dose dependent no NA NA
364 33.51 wind 9.0 270 > th dose dependent rect. 9 17
379 33.51 wind 9.0 270 > th dose dependent rect. 1 22
404 33.52 wind 9.0 270 > th dose dependent rect. 9 14
430 33.53 precipitation 0.1 43200 < th dose independent rect. 18 3
434 33.53 precipitation 0.1 43200 < th dose dependent rect. 18 3
452 33.55 radiation 1.0 4320 < th dose independent rect. 18 2
465 33.56 wind 1.0 43200 < th dose independent sin 10 NA
466 33.56 radiation 1.0 4320 < th dose independent rect. 18 7
474 33.57 wind 7.0 720 < th dose independent sin 6 NA
476 33.57 precipitation 0.1 43200 > th dose independent rect. 18 3
501 33.59 radiation 1.0 4320 < th dose independent rect. 18 12
515 33.60 wind 1.0 43200 < th dose dependent rect. 22 10
535 33.62 wind 1.0 43200 < th dose independent rect. 5 4
562 33.64 wind 7.0 720 < th dose independent rect. 23 16
660 33.67 precipitation 0.1 43200 > th dose dependent rect. 13 13
668 33.68 wind 9.0 720 < th dose independent sin 2 NA
669 33.68 wind 9.0 1440 < th dose independent rect. 11 1
712 33.71 wind 9.0 270 < th dose independent no NA NA
719 33.71 precipitation 0.1 43200 > th dose dependent rect. 16 1
847 33.76 wind 1.0 14400 > th dose independent rect. 18 3
879 33.77 wind 9.0 270 > th dose dependent sin 19 NA
927 33.79 humidity 90.0 14400 < th dose independent rect. 3 3
963 33.80 wind 9.0 270 > th dose independent no NA NA
972 33.80 wind 9.0 270 > th dose independent rect. 9 17