Os02g0644000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to C13 endopeptidase NP1 (Fragment).
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Os02g0644000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to C13 endopeptidase NP1 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.22 | 0.359 | 10.5 | 0.361 | 0.391 | -0.677 | -0.499 | -0.225 | 0.0179 | 1.22 | 68 | 1237 | -- | -- |
| 58.32 | 0.356 | 10.5 | 0.385 | 0.392 | -0.693 | -0.535 | -- | 0.021 | 1.21 | 68 | 1236 | -- | -- |
| 59.19 | 0.358 | 10.5 | 0.361 | 0.394 | -0.679 | -- | -0.392 | 0.016 | 1.24 | 68.01 | 1236 | -- | -- |
| 59.49 | 0.359 | 10.5 | 0.407 | 0.395 | -0.703 | -- | -- | 0.0268 | 1.25 | 68 | 1236 | -- | -- |
| 65.09 | 0.376 | 10.4 | 0.394 | -- | -0.708 | -- | 0.0136 | 0.117 | -- | 71.97 | 1573 | -- | -- |
| 75.81 | 0.408 | 10.5 | 0.237 | 0.232 | -- | -0.68 | -- | 0.021 | 1.18 | -- | -- | -- | -- |
| 77.71 | 0.413 | 10.5 | 0.26 | 0.233 | -- | -- | -- | 0.0245 | 1.4 | -- | -- | -- | -- |
| 65.08 | 0.376 | 10.4 | 0.399 | -- | -0.709 | -- | -- | 0.125 | -- | 71.8 | 1566 | -- | -- |
| 63.76 | 0.372 | 10.5 | -- | 0.368 | -0.638 | -- | -- | -0.0108 | 1.31 | 68.46 | 1241 | -- | -- |
| 81.07 | 0.421 | 10.5 | 0.269 | -- | -- | -- | -- | 0.0294 | -- | -- | -- | -- | -- |
| 79.5 | 0.417 | 10.5 | -- | 0.238 | -- | -- | -- | -0.00451 | 1.43 | -- | -- | -- | -- |
| 68.94 | 0.387 | 10.4 | -- | -- | -0.669 | -- | -- | 0.0921 | -- | 71 | 1598 | -- | -- |
| 82.98 | 0.425 | 10.5 | -- | -- | -- | -- | -- | -0.00049 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.90 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 2 | 60.04 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 3 | 60.46 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 4 | 60.47 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 6 | 60.50 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 11 | 21 |
| 10 | 60.63 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 21 |
| 11 | 60.66 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 23 | 60.72 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 26 | 60.80 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 9 |
| 27 | 60.80 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 17 |
| 31 | 60.80 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 23 | 7 |
| 80 | 61.06 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 81 | 61.06 | wind | 3.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 90 | 61.07 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 23 | 8 |
| 93 | 61.09 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 94 | 61.10 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 17 | 21 |
| 99 | 61.13 | humidity | 70.0 | 1440 | < th | dose independent | sin | 19 | NA |
| 134 | 61.25 | humidity | 70.0 | 1440 | < th | dose independent | no | NA | NA |
| 137 | 61.25 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 6 | 14 |
| 201 | 61.27 | humidity | 70.0 | 1440 | > th | dose independent | sin | 20 | NA |
| 219 | 61.29 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 2 | 18 |
| 222 | 61.29 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 23 | 21 |
| 223 | 61.29 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 2 | 22 |
| 227 | 61.29 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 229 | 61.30 | humidity | 70.0 | 1440 | > th | dose independent | no | NA | NA |
| 231 | 61.30 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 6 | 14 |
| 240 | 61.30 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 6 | 18 |
| 252 | 61.30 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 6 | 21 |
| 349 | 61.43 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 397 | 61.57 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 7 |
| 400 | 61.58 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 11 | 22 |
| 430 | 61.65 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 18 | 22 |
| 458 | 61.75 | humidity | 80.0 | 1440 | < th | dose dependent | no | NA | NA |
| 460 | 61.75 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 24 | 22 |
| 468 | 61.76 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 5 | 21 |
| 482 | 61.77 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 3 | 19 |
| 483 | 61.77 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 6 | 19 |
| 494 | 61.78 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 7 |
| 497 | 61.78 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 7 |
| 500 | 61.78 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 5 | 17 |
| 503 | 61.78 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 10 | 18 |
| 561 | 61.83 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 10 | 12 |
| 618 | 61.91 | wind | 3.0 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 622 | 61.92 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 623 | 61.92 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 640 | 61.95 | humidity | 80.0 | 1440 | < th | dose dependent | sin | 21 | NA |
| 662 | 62.00 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 681 | 62.03 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 9 |
| 693 | 62.06 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 7 |
| 704 | 62.07 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 722 | 62.10 | wind | 3.0 | 43200 | < th | dose independent | rect. | 23 | 9 |
| 733 | 62.12 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 7 |
| 752 | 62.16 | wind | 3.0 | 43200 | > th | dose independent | rect. | 23 | 9 |
| 890 | 62.38 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 1 | 2 |
| 925 | 62.41 | wind | 9.0 | 43200 | < th | dose dependent | sin | 8 | NA |
| 950 | 62.45 | wind | 1.0 | 43200 | > th | dose dependent | sin | 8 | NA |
| 963 | 62.47 | wind | 3.0 | 43200 | > th | dose independent | rect. | 7 | 1 |