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Os05g0593900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to C13 endopeptidase NP1 precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.43 (0.0539) R2 : 0.543
β1 : -2.47 (0.199) R2dD : 0.179 R2D : -0.0531
β2 : 1.08 (0.127) R2dC : 0.081 R2C : 0.0778
β3 : -2.57 (0.2) R2dE : 0.229 R2E : 0.11
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -9.87 (0.688) R2dD*E : 0.262 R2D*E : 0.148
γ1 : -0.377 (0.116) R2dN8 : 0.0157 R2N8 : 0.0119
σ : 0.953
deviance : 418.83
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C
peak time of C : 8.97
E
wheather : radiation
threshold : 36.48
memory length : 5863
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 14
open length of G : 0.55

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
435.64 0.981 6.42 -2.43 1.06 -2.41 -0.413 -10.3 -0.439 9.18 34.5 4573 14 0.773
531.61 1.07 6.49 -1.61 1.09 -2.43 0.194 -- -0.15 9.09 2.661 11628 14 0.0161
418.83 0.953 6.43 -2.47 1.08 -2.57 -- -9.87 -0.377 8.97 36.48 5863 14 0.55
513.55 1.06 6.51 -1.07 1.14 -3.01 -- -- -0.0572 8.88 2.396 11636 14 0.0166
473.4 1.01 6.43 -2.17 -- -3.04 -- -9.68 -0.25 -- 36.17 5173 13.9 0.567
758.96 1.29 6.72 -1.2 1.15 -- -0.0618 -- -0.86 9.31 -- -- -- --
758.97 1.29 6.72 -1.21 1.15 -- -- -- -0.86 9.31 -- -- -- --
539.12 1.08 6.53 -1.04 -- -3.12 -- -- -0.0654 -- 0.2009 12374 14 0.0167
543.43 1.09 6.52 -- 1.11 -3.01 -- -- 0.0145 9.19 1.996 11620 14 0.00694
836.7 1.35 6.75 -1.21 -- -- -- -- -0.856 -- -- -- -- --
797.3 1.32 6.69 -- 1.16 -- -- -- -0.726 9.39 -- -- -- --
561.14 1.1 6.53 -- -- -3.18 -- -- 0.142 -- -0.2789 12370 14 0.0166
875.4 1.38 6.72 -- -- -- -- -- -0.721 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 418.83 radiation 10.0 14400 > th dose independent rect. 17 14
2 422.72 precipitation 0.1 43200 > th dose independent rect. 15 2
3 423.07 precipitation 0.1 43200 < th dose independent rect. 15 2
4 423.07 precipitation 0.1 43200 < th dose dependent rect. 15 2
5 423.17 temperature 25.0 14400 > th dose independent rect. 6 1
6 423.62 radiation 10.0 14400 > th dose independent rect. 6 1
19 425.10 precipitation 0.1 43200 > th dose dependent rect. 15 2
23 427.21 humidity 80.0 43200 > th dose independent rect. 14 1
24 427.34 radiation 20.0 14400 < th dose dependent rect. 6 1
25 427.65 temperature 25.0 14400 < th dose independent rect. 6 1
27 428.34 radiation 20.0 14400 < th dose dependent rect. 3 4
28 428.34 radiation 20.0 14400 < th dose dependent rect. 18 13
31 428.46 radiation 1.0 14400 > th dose dependent rect. 6 1
32 428.46 radiation 20.0 14400 < th dose dependent rect. 1 6
39 428.55 precipitation 0.1 43200 > th dose dependent rect. 13 4
43 428.94 humidity 80.0 43200 < th dose independent rect. 14 1
46 429.28 radiation 40.0 14400 < th dose dependent rect. 3 4
47 429.30 radiation 40.0 14400 < th dose dependent rect. 18 13
50 429.36 precipitation 0.1 43200 < th dose independent rect. 13 4
51 429.36 precipitation 0.1 43200 < th dose dependent rect. 13 4
52 429.40 radiation 10.0 14400 < th dose independent rect. 6 1
53 429.43 precipitation 0.1 43200 > th dose independent rect. 13 4
79 429.90 humidity 80.0 43200 > th dose dependent rect. 17 1
88 430.49 humidity 80.0 43200 > th dose independent rect. 12 6
102 431.10 radiation 20.0 14400 > th dose independent rect. 16 17
110 432.09 humidity 80.0 43200 > th dose independent rect. 16 1
112 432.30 humidity 80.0 43200 < th dose independent rect. 13 4
113 432.54 radiation 10.0 14400 < th dose independent rect. 6 3
114 432.58 humidity 90.0 43200 > th dose independent rect. 19 3
117 432.73 temperature 25.0 14400 > th dose dependent rect. 6 1
123 433.09 radiation 10.0 14400 < th dose independent rect. 3 6
128 433.15 radiation 10.0 14400 < th dose independent rect. 20 13
130 433.17 radiation 10.0 14400 < th dose independent rect. 22 11
134 433.46 humidity 90.0 43200 < th dose independent rect. 19 3
135 433.46 radiation 10.0 14400 < th dose independent rect. 13 20
139 433.72 precipitation 0.1 43200 > th dose independent rect. 13 7
140 433.77 radiation 20.0 14400 < th dose independent rect. 16 17
142 433.79 precipitation 0.1 43200 < th dose independent rect. 13 7
143 433.79 precipitation 0.1 43200 < th dose dependent rect. 13 7
156 434.88 radiation 30.0 14400 < th dose dependent rect. 17 16
158 435.01 humidity 90.0 43200 < th dose independent rect. 17 5
177 435.22 radiation 10.0 14400 < th dose independent rect. 11 22
200 436.25 radiation 10.0 14400 < th dose independent sin 11 NA
203 436.34 temperature 25.0 14400 > th dose dependent rect. 24 9
207 436.45 radiation 1.0 14400 > th dose dependent rect. 17 16
229 436.88 humidity 90.0 43200 > th dose dependent rect. 20 1
305 437.83 radiation 1.0 14400 < th dose independent rect. 17 1
358 438.34 radiation 1.0 14400 > th dose independent rect. 17 1
394 438.88 humidity 80.0 43200 > th dose dependent rect. 9 1
537 440.53 humidity 80.0 43200 > th dose dependent rect. 9 11
542 440.65 humidity 90.0 14400 < th dose independent rect. 6 1
547 440.72 temperature 10.0 14400 > th dose dependent rect. 6 1
550 440.75 radiation 10.0 14400 < th dose independent rect. 15 23
551 440.81 humidity 80.0 43200 > th dose dependent rect. 9 13
555 440.92 radiation 10.0 14400 < th dose independent rect. 3 15
558 440.93 radiation 10.0 14400 < th dose independent rect. 5 13
560 440.93 radiation 10.0 14400 < th dose independent rect. 24 18
561 440.93 radiation 10.0 14400 < th dose independent rect. 19 23
589 440.95 radiation 10.0 14400 < th dose independent no NA NA
621 440.95 temperature 30.0 14400 < th dose dependent rect. 6 1
650 441.18 humidity 90.0 43200 > th dose independent rect. 7 3
674 441.38 humidity 90.0 43200 < th dose independent rect. 7 15
689 441.72 humidity 90.0 43200 < th dose independent rect. 7 3
714 442.05 radiation 1.0 14400 < th dose independent rect. 17 5
718 442.06 radiation 1.0 14400 < th dose independent rect. 17 3
727 442.10 radiation 1.0 14400 < th dose independent rect. 17 9
733 442.15 radiation 1.0 14400 < th dose independent rect. 17 11
769 442.48 radiation 20.0 14400 < th dose dependent rect. 13 20
789 442.73 temperature 30.0 14400 < th dose independent rect. 9 1
807 442.91 radiation 20.0 14400 < th dose dependent sin 11 NA
823 443.04 radiation 10.0 14400 < th dose independent rect. 8 23
839 443.13 radiation 10.0 14400 < th dose dependent rect. 13 18
925 443.87 precipitation 0.1 43200 > th dose dependent rect. 2 18
952 444.07 humidity 60.0 43200 > th dose dependent rect. 17 1
990 444.29 precipitation 0.1 43200 > th dose dependent rect. 13 1