BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0217900 Os02g0217900|Os02g0217900
(175 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0217900 Similar to Cytosolic class II small heat shock... 222 9e-59
Os01g0184200 Similar to 17.5 kDa class II heat shock protein 110 5e-25
Os03g0266300 Class I low-molecular-weight heat shock protei... 68 4e-12
Os03g0267200 Low molecular mass heat shock protein Oshsp17.7 67 8e-12
Os01g0136000 Similar to Cytosolic class I small heat-shock ... 65 4e-11
>Os02g0217900 Similar to Cytosolic class II small heat shock protein 4 (Fragment)
Length = 175
Score = 222 bits (566), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 124/175 (70%), Positives = 124/175 (70%)
Query: 1 MELSVVGGEPLLAVAMXXXXXXXXXXXXXXXXNPPTRAYVRDRRAMANTPMDVKELRASG 60
MELSVVGGEPLLAVAM NPPTRAYVRDRRAMANTPMDVKELRASG
Sbjct: 1 MELSVVGGEPLLAVAMQQLLDLDLPDELERQLNPPTRAYVRDRRAMANTPMDVKELRASG 60
Query: 61 ALVLAVDMPGVAPADVRVEVEDGNVLAISXXXXXXXXXXXXXXXXVKYLRMERRMGKFMR 120
ALVLAVDMPGVAPADVRVEVEDGNVLAIS VKYLRMERRMGKFMR
Sbjct: 61 ALVLAVDMPGVAPADVRVEVEDGNVLAISGERRRPAGDGDDGGEGVKYLRMERRMGKFMR 120
Query: 121 RFPLPESADLDGVRAEYKDGVLTVTXXXXXXXXXXXXXXXXXXXAGAGEPKGKGK 175
RFPLPESADLDGVRAEYKDGVLTVT AGAGEPKGKGK
Sbjct: 121 RFPLPESADLDGVRAEYKDGVLTVTVDKKPPPEPKKPRVVEVKVAGAGEPKGKGK 175
>Os01g0184200 Similar to 17.5 kDa class II heat shock protein
Length = 166
Score = 110 bits (275), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/111 (54%), Positives = 74/111 (66%), Gaps = 3/111 (2%)
Query: 35 PTRAYVRDRRAMANTPMDVKELRASGALVLAVDMPGVAPADVRVEVEDGNVLAISXXXXX 94
PTRAYVRD RAMA TP DVK+L GA VDMPG+ +D++V+VE+ +L IS
Sbjct: 39 PTRAYVRDARAMAATPADVKDL--PGAYAFVVDMPGLKSSDIKVQVEEERLLVISGERRR 96
Query: 95 XXXXXXXXXXXVKYLRMERRMGKFMRRFPLPESADLDGVRAEYKDGVLTVT 145
KYLRMERRMGKFMR+F LP++AD+D + A +DGVLTVT
Sbjct: 97 GGGEEEKEES-CKYLRMERRMGKFMRKFVLPDNADVDKISAVCQDGVLTVT 146
>Os03g0266300 Class I low-molecular-weight heat shock protein 17.9
Length = 161
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 7/101 (6%)
Query: 45 AMANTPMDVKELRASGALVLAVDMPGVAPADVRVEVEDGNVLAISXXXXXXXXXXXXXXX 104
A A +D KE A V D+PG+ +V+VEV+DGN+L IS
Sbjct: 50 AFAGARIDWKE--TPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTD--- 104
Query: 105 XVKYLRMERRMGKFMRRFPLPESADLDGVRAEYKDGVLTVT 145
++ R+ER GKF+RRF LP++A + ++A ++GVLTVT
Sbjct: 105 --QWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVT 143
>Os03g0267200 Low molecular mass heat shock protein Oshsp17.7
Length = 159
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 42 DRRAMANTPMDVKELRASGALVLAVDMPGVAPADVRVEVEDGNVLAISXXXXXXXXXXXX 101
D A A +D KE V D+PG+ +V+VEV+DGN+L IS
Sbjct: 45 DAAAFAGARIDWKE--TPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSD 102
Query: 102 XXXXVKYLRMERRMGKFMRRFPLPESADLDGVRAEYKDGVLTVT 145
K+ R+ER GKF+RRF LPE+ + ++A ++GVLTVT
Sbjct: 103 -----KWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVT 141
>Os01g0136000 Similar to Cytosolic class I small heat-shock protein HSP17.5
Length = 149
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 61/105 (58%), Gaps = 7/105 (6%)
Query: 41 RDRRAMANTPMDVKELRASGALVLAVDMPGVAPADVRVEVEDGNVLAISXXXXXXXXXXX 100
RD A AN +D KE S V D+PGV +V+VEVE+GNVL IS
Sbjct: 34 RDTAAFANARVDWKETPESH--VFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKN 91
Query: 101 XXXXXVKYLRMERRMGKFMRRFPLPESADLDGVRAEYKDGVLTVT 145
K+ R+ER G+FMRRF LPE+A +D V+A ++GVLTVT
Sbjct: 92 D-----KWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVT 131
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.136 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,288,321
Number of extensions: 120619
Number of successful extensions: 231
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 9
Length of query: 175
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 81
Effective length of database: 12,127,685
Effective search space: 982342485
Effective search space used: 982342485
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 152 (63.2 bits)