Os02g0217900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cytosolic class II small heat shock protein 4 (Fragment).
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Os02g0217900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cytosolic class II small heat shock protein 4 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 183.36 | 0.636 | 9.89 | 0.946 | 1.14 | -1.89 | 0.39 | -1.87 | -0.438 | 13 | 25 | 76 | -- | -- |
| 187.27 | 0.637 | 9.9 | 0.932 | 1.08 | -1.93 | 2.01 | -- | -0.464 | 12.9 | 23.56 | 79 | -- | -- |
| 183.58 | 0.631 | 9.9 | 0.961 | 1.17 | -1.86 | -- | -2.14 | -0.432 | 13 | 24.98 | 76 | -- | -- |
| 204.58 | 0.666 | 9.9 | 1 | 1.03 | -1.97 | -- | -- | -0.447 | 13.2 | 23.24 | 76 | -- | -- |
| 199.82 | 0.658 | 9.93 | 0.906 | -- | -2.59 | -- | -2 | -0.485 | -- | 18.13 | 76 | -- | -- |
| 248.4 | 0.739 | 9.84 | 1.01 | 2.9 | -- | 2.27 | -- | -0.33 | 12.8 | -- | -- | -- | -- |
| 270.3 | 0.77 | 9.84 | 1.1 | 2.89 | -- | -- | -- | -0.318 | 12.8 | -- | -- | -- | -- |
| 218.46 | 0.688 | 9.92 | 0.989 | -- | -2.65 | -- | -- | -0.514 | -- | 18.34 | 79 | -- | -- |
| 231.01 | 0.708 | 9.93 | -- | 0.957 | -2.03 | -- | -- | -0.566 | 13.1 | 23.45 | 79 | -- | -- |
| 793.24 | 1.32 | 9.89 | 0.992 | -- | -- | -- | -- | -0.37 | -- | -- | -- | -- | -- |
| 302.06 | 0.813 | 9.87 | -- | 2.88 | -- | -- | -- | -0.44 | 12.8 | -- | -- | -- | -- |
| 243.71 | 0.727 | 9.95 | -- | -- | -2.76 | -- | -- | -0.604 | -- | 21.48 | 79 | -- | -- |
| 819.21 | 1.34 | 9.91 | -- | -- | -- | -- | -- | -0.481 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 186.22 | radiation | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 2 | 186.33 | radiation | 30 | 90 | < th | dose dependent | no | NA | NA |
| 3 | 186.83 | radiation | 30 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 6 | 187.80 | radiation | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 7 | 187.99 | radiation | 20 | 90 | < th | dose dependent | sin | 1 | NA |
| 10 | 188.23 | radiation | 20 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 17 | 189.64 | radiation | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 21 | 190.26 | radiation | 20 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 41 | 192.97 | radiation | 30 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 53 | 194.82 | radiation | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 56 | 195.20 | radiation | 10 | 90 | < th | dose independent | rect. | 7 | 23 |
| 59 | 195.56 | radiation | 10 | 90 | > th | dose independent | rect. | 6 | 11 |
| 82 | 196.41 | radiation | 10 | 90 | < th | dose independent | rect. | 17 | 22 |
| 87 | 196.71 | radiation | 10 | 90 | > th | dose independent | sin | 1 | NA |
| 89 | 196.83 | radiation | 10 | 90 | < th | dose independent | sin | 1 | NA |
| 96 | 197.24 | radiation | 10 | 90 | > th | dose independent | no | NA | NA |
| 186 | 197.58 | radiation | 1 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 190 | 197.90 | radiation | 10 | 90 | > th | dose independent | rect. | 15 | 23 |
| 191 | 197.97 | radiation | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 192 | 197.99 | radiation | 10 | 90 | > th | dose independent | rect. | 9 | 23 |
| 196 | 198.19 | radiation | 10 | 90 | < th | dose independent | rect. | 1 | 23 |
| 202 | 198.36 | radiation | 1 | 90 | > th | dose dependent | rect. | 6 | 11 |
| 204 | 198.39 | radiation | 1 | 90 | > th | dose dependent | rect. | 4 | 13 |
| 215 | 198.42 | radiation | 10 | 90 | < th | dose independent | no | NA | NA |
| 244 | 198.77 | radiation | 1 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 258 | 198.82 | radiation | 1 | 90 | > th | dose dependent | no | NA | NA |
| 318 | 198.96 | radiation | 30 | 90 | < th | dose dependent | rect. | 3 | 17 |
| 323 | 199.32 | radiation | 10 | 90 | < th | dose independent | rect. | 13 | 23 |
| 326 | 199.39 | radiation | 10 | 90 | < th | dose independent | rect. | 9 | 23 |
| 338 | 199.67 | radiation | 1 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 353 | 200.26 | radiation | 20 | 90 | < th | dose independent | rect. | 3 | 12 |
| 379 | 201.01 | radiation | 10 | 90 | < th | dose independent | rect. | 11 | 23 |
| 380 | 201.03 | radiation | 1 | 90 | > th | dose dependent | sin | 3 | NA |
| 402 | 201.58 | radiation | 10 | 90 | < th | dose independent | rect. | 3 | 17 |
| 405 | 201.69 | radiation | 10 | 90 | < th | dose independent | rect. | 2 | 21 |
| 462 | 202.30 | radiation | 1 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 486 | 202.81 | radiation | 10 | 90 | < th | dose independent | rect. | 21 | 23 |
| 515 | 203.14 | humidity | 80 | 10 | > th | dose dependent | sin | 0 | NA |
| 542 | 203.72 | radiation | 20 | 90 | > th | dose independent | rect. | 12 | 23 |
| 544 | 203.74 | radiation | 10 | 90 | < th | dose independent | rect. | 23 | 23 |
| 908 | 207.22 | humidity | 80 | 10 | > th | dose independent | sin | 1 | NA |
| 915 | 207.27 | humidity | 80 | 10 | > th | dose independent | rect. | 2 | 18 |