BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0217900 Os02g0217900|Os02g0217900
(175 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G12020.1 | chr5:3882409-3882876 REVERSE LENGTH=156 102 9e-23
AT5G12030.1 | chr5:3884214-3884684 REVERSE LENGTH=157 102 1e-22
AT1G53540.1 | chr1:19980510-19980983 FORWARD LENGTH=158 71 3e-13
AT1G07400.1 | chr1:2275148-2275621 FORWARD LENGTH=158 68 3e-12
AT1G59860.1 | chr1:22031474-22031941 FORWARD LENGTH=156 66 9e-12
AT1G54050.1 | chr1:20179558-20180122 REVERSE LENGTH=156 63 8e-11
AT3G46230.1 | chr3:16984263-16984733 REVERSE LENGTH=157 62 2e-10
AT5G59720.1 | chr5:24062632-24063117 FORWARD LENGTH=162 60 4e-10
AT4G10250.1 | chr4:6370537-6371124 FORWARD LENGTH=196 58 3e-09
AT2G29500.1 | chr2:12633279-12633740 REVERSE LENGTH=154 51 4e-07
AT5G37670.1 | chr5:14969035-14969448 FORWARD LENGTH=138 49 1e-06
AT4G21870.1 | chr4:11603756-11604285 REVERSE LENGTH=135 48 2e-06
>AT5G12020.1 | chr5:3882409-3882876 REVERSE LENGTH=156
Length = 155
Score = 102 bits (254), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 70/113 (61%), Gaps = 6/113 (5%)
Query: 33 NPPTRAYVRDRRAMANTPMDVKELRASGALVLAVDMPGVAPADVRVEVEDGNVLAISXXX 92
N P+R Y+RD +AMA TP DV + A VDMPG+ +++V+VE+ NVL +S
Sbjct: 29 NNPSRVYMRDAKAMAATPADV--IEHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGER 86
Query: 93 XXXXXXXXXXXXXVKYLRMERRMGKFMRRFPLPESADLDGVRAEYKDGVLTVT 145
VKY+RMERRMGKFMR+F LPE+ADLD + A DGVL VT
Sbjct: 87 QRENKENEG----VKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVLKVT 135
>AT5G12030.1 | chr5:3884214-3884684 REVERSE LENGTH=157
Length = 156
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 73/113 (64%), Gaps = 6/113 (5%)
Query: 33 NPPTRAYVRDRRAMANTPMDVKELRASGALVLAVDMPGVAPADVRVEVEDGNVLAISXXX 92
N P+RAY+RD +AMA TP DV + A V AVDMPG+ +++V++E+ NVL +S
Sbjct: 30 NNPSRAYMRDAKAMAATPADV--IEHPDAYVFAVDMPGIKGDEIQVQIENENVLVVSGKR 87
Query: 93 XXXXXXXXXXXXXVKYLRMERRMGKFMRRFPLPESADLDGVRAEYKDGVLTVT 145
VK++RMERRMGKFMR+F LP++ADL+ + A DGVL VT
Sbjct: 88 QRDNKENEG----VKFVRMERRMGKFMRKFQLPDNADLEKISAACNDGVLKVT 136
>AT1G53540.1 | chr1:19980510-19980983 FORWARD LENGTH=158
Length = 157
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 58/104 (55%), Gaps = 7/104 (6%)
Query: 42 DRRAMANTPMDVKELRASGALVLAVDMPGVAPADVRVEVEDGNVLAISXXXXXXXXXXXX 101
D A N +D +E A V D+PG+ +V+VEVEDGN+L IS
Sbjct: 43 DVAAFTNAKVDWRE--TPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKND 100
Query: 102 XXXXVKYLRMERRMGKFMRRFPLPESADLDGVRAEYKDGVLTVT 145
K+ R+ER GKF RRF LPE+A ++ ++A ++GVL+VT
Sbjct: 101 -----KWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVT 139
>AT1G07400.1 | chr1:2275148-2275621 FORWARD LENGTH=158
Length = 157
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 45 AMANTPMDVKELRASGALVLAVDMPGVAPADVRVEVEDGNVLAISXXXXXXXXXXXXXXX 104
A+ N +D KE + A V D+PG+ +V+VE+ED +VL IS
Sbjct: 44 AITNARVDWKE--TAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDT-- 99
Query: 105 XVKYLRMERRMGKFMRRFPLPESADLDGVRAEYKDGVLTVT 145
+ R+ER G+F R+F LPE+ +D V+A ++GVLTVT
Sbjct: 100 ---WHRVERSSGQFSRKFKLPENVKMDQVKASMENGVLTVT 137
>AT1G59860.1 | chr1:22031474-22031941 FORWARD LENGTH=156
Length = 155
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 45 AMANTPMDVKELRASGALVLAVDMPGVAPADVRVEVEDGNVLAISXXXXXXXXXXXXXXX 104
A+AN +D KE + A V D+PG+ +V+VE+ED +VL IS
Sbjct: 42 AIANARVDWKE--TAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDT-- 97
Query: 105 XVKYLRMERRMGKFMRRFPLPESADLDGVRAEYKDGVLTVT 145
+ R+ER G F R+F LPE+ +D V+A ++GVLTVT
Sbjct: 98 ---WHRVERSSGGFSRKFRLPENVKMDQVKASMENGVLTVT 135
>AT1G54050.1 | chr1:20179558-20180122 REVERSE LENGTH=156
Length = 155
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 4/105 (3%)
Query: 41 RDRRAMANTPMDVKELRASGALVLAVDMPGVAPADVRVEVEDGNVLAISXXXXXXXXXXX 100
R R + N P+D+ L + + +D+PG++ +D++V VE+ L I
Sbjct: 34 RGRGSSNNIPIDI--LESPKEYIFYLDIPGISKSDIQVTVEEERTLVIKSNGKRKRDDDE 91
Query: 101 XXXXXVKYLRMERRMGK-FMRRFPLPESADLDGVRAEYKDGVLTV 144
KY+R+ERR+ + +++F LPE AD+ V A+Y++GVLTV
Sbjct: 92 SEEGS-KYIRLERRLAQNLVKKFRLPEDADMASVTAKYQEGVLTV 135
>AT3G46230.1 | chr3:16984263-16984733 REVERSE LENGTH=157
Length = 156
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 61/110 (55%), Gaps = 7/110 (6%)
Query: 36 TRAYVRDRRAMANTPMDVKELRASGALVLAVDMPGVAPADVRVEVEDGNVLAISXXXXXX 95
T A +D A N +D +E A V D+PG+ +V+VEVEDGN+L IS
Sbjct: 36 TNAPAKDVAAFTNAKVDWRE--TPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSE 93
Query: 96 XXXXXXXXXXVKYLRMERRMGKFMRRFPLPESADLDGVRAEYKDGVLTVT 145
+ R+ER GKFMRRF LPE+A ++ V+A ++GVL+VT
Sbjct: 94 NEEKSDT-----WHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVT 138
>AT5G59720.1 | chr5:24062632-24063117 FORWARD LENGTH=162
Length = 161
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 59/107 (55%), Gaps = 7/107 (6%)
Query: 38 AYVRDRRAMANTPMDVKELRASGALVLAVDMPGVAPADVRVEVEDGNVLAISXXXXXXXX 97
+ RD A N +D KE A V D+PG+ +V+VEVED NVL IS
Sbjct: 41 STARDVAAFTNARVDWKE--TPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENE 98
Query: 98 XXXXXXXXVKYLRMERRMGKFMRRFPLPESADLDGVRAEYKDGVLTV 144
K+ R+ER GKFMRRF LPE+A ++ V+A ++GVLTV
Sbjct: 99 EKND-----KWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTV 140
>AT4G10250.1 | chr4:6370537-6371124 FORWARD LENGTH=196
Length = 195
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 7/101 (6%)
Query: 45 AMANTPMDVKELRASGALVLAVDMPGVAPADVRVEVEDGNVLAISXXXXXXXXXXXXXXX 104
A++ +D KE A G ++ +D+PG+ +V++EVE+ VL +S
Sbjct: 67 ALSPARVDWKET-AEGHEIM-LDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGD--- 121
Query: 105 XVKYLRMERRMGKFMRRFPLPESADLDGVRAEYKDGVLTVT 145
++ R+ER GKF R+F LP++ D++ V+A+ ++GVLT+
Sbjct: 122 --QWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVLTIN 160
>AT2G29500.1 | chr2:12633279-12633740 REVERSE LENGTH=154
Length = 153
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 7/105 (6%)
Query: 41 RDRRAMANTPMDVKELRASGALVLAVDMPGVAPADVRVEVEDGNVLAISXXXXXXXXXXX 100
R+ A+ N +D +E A V D+PG+ +V+VE+E+ +VL IS
Sbjct: 38 RENSAIVNARVDWRE--TPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKN 95
Query: 101 XXXXXVKYLRMERRMGKFMRRFPLPESADLDGVRAEYKDGVLTVT 145
+ R+ER G+F RRF LPE+ +D V+A ++GVLTVT
Sbjct: 96 DT-----WHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVT 135
>AT5G37670.1 | chr5:14969035-14969448 FORWARD LENGTH=138
Length = 137
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 46/89 (51%)
Query: 56 LRASGALVLAVDMPGVAPADVRVEVEDGNVLAISXXXXXXXXXXXXXXXXVKYLRMERRM 115
+ ++ + + +++PG D++V++E+GNVL+I +
Sbjct: 27 MESNNSHIFKINVPGYNKEDIKVQIEEGNVLSIRGEGIKEEKKENLVWHVAEREAFSGGG 86
Query: 116 GKFMRRFPLPESADLDGVRAEYKDGVLTV 144
+F+RR LPE+ +D V+A ++GVLTV
Sbjct: 87 SEFLRRIELPENVKVDQVKAYVENGVLTV 115
>AT4G21870.1 | chr4:11603756-11604285 REVERSE LENGTH=135
Length = 134
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 14/107 (13%)
Query: 39 YVRDRRAMANTPMD-VKELRASGALVLAVDMPGVAPADVRVEVEDGNVLAISXXXXXXXX 97
YV +++ N + V+ ++ + +VD+PG+ +++VE+ED L I
Sbjct: 13 YVLASQSLNNYQENHVRWSQSPDSHTFSVDLPGLRKEEIKVEIEDSIYLIIRTEATPMSP 72
Query: 98 XXXXXXXXVKYLRMERRMGKFMRRFPLPESADLDGVRAEYKDGVLTV 144
++ + F R+F LPES D+ G+ A Y+DGVLTV
Sbjct: 73 P-------------DQPLKTFKRKFRLPESIDMIGISAGYEDGVLTV 106
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.136 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,434,753
Number of extensions: 63269
Number of successful extensions: 119
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 12
Length of query: 175
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 83
Effective length of database: 8,584,297
Effective search space: 712496651
Effective search space used: 712496651
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)