BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0208900 Os02g0208900|AK121183
(728 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0208900 Similar to ZIGA2 protein (Fragment) 1112 0.0
Os03g0323500 Arf GTPase activating protein family protein 228 1e-59
Os01g0813900 Similar to ZIGA1 protein (Fragment) 214 1e-55
Os05g0534800 Arf GTPase activating protein family protein 214 3e-55
Os07g0563800 Arf GTPase activating protein family protein 87 6e-17
>Os02g0208900 Similar to ZIGA2 protein (Fragment)
Length = 728
Score = 1112 bits (2876), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/728 (78%), Positives = 568/728 (78%)
Query: 1 MASRLKEDERNERIIRGLLKLPANKRCINCNNLGPQYVCTNFWTFICTNCSGAHREFTHR 60
MASRLKEDERNERIIRGLLKLPANKRCINCNNLGPQYVCTNFWTFICTNCSGAHREFTHR
Sbjct: 1 MASRLKEDERNERIIRGLLKLPANKRCINCNNLGPQYVCTNFWTFICTNCSGAHREFTHR 60
Query: 61 AKSVSMAKFTAQEVSALQEGGNERAREIFFKEWDAHRNSFPDSSNADKLRNFIKHVYVER 120
AKSVSMAKFTAQEVSALQEGGNERAREIFFKEWDAHRNSFPDSSNADKLRNFIKHVYVER
Sbjct: 61 AKSVSMAKFTAQEVSALQEGGNERAREIFFKEWDAHRNSFPDSSNADKLRNFIKHVYVER 120
Query: 121 RYTGERSADRPPRGKDDKDEYSENRRSDGNWGGSRSPPYNEXXXXXXXXXXXXXXXXXXX 180
RYTGERSADRPPRGKDDKDEYSENRRSDGNWGGSRSPPYNE
Sbjct: 121 RYTGERSADRPPRGKDDKDEYSENRRSDGNWGGSRSPPYNESYSDRRSYSGRSDDRNSRY 180
Query: 181 XXGERSPGYEHNDYKKSPRYFEVDDRNREDRSGKTTPVQRFEDRRPSEPQRPDNGSPNYQ 240
GERSPGYEHNDYKKSPRYFEVDDRNREDRSGKTTPVQRFEDRRPSEPQRPDNGSPNYQ
Sbjct: 181 SYGERSPGYEHNDYKKSPRYFEVDDRNREDRSGKTTPVQRFEDRRPSEPQRPDNGSPNYQ 240
Query: 241 KETDGSSPVVRPVRDILGDNAPQLRVGEPPKPNVARTXXXXXXXXXXXXXXXXXXXXXXX 300
KETDGSSPVVRPVRDILGDNAPQLRVGEPPKPNVART
Sbjct: 241 KETDGSSPVVRPVRDILGDNAPQLRVGEPPKPNVARTIDPPRPIDPPRPIDPPRPIDPPR 300
Query: 301 XXXXXXXNGTRTIEPPPQMQRTSTASSIGSSEGTSEQIKVASTISLIDFSADPEXXXXXX 360
NGTRTIEPPPQMQRTSTASSIGSSEGTSEQIKVASTISLIDFSADPE
Sbjct: 301 PIDPPRPNGTRTIEPPPQMQRTSTASSIGSSEGTSEQIKVASTISLIDFSADPEPSASVP 360
Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQGKNXXXXXXXXXDWASFDSFGQQQTPQT 420
EQGKN DWASFDSFGQQQTPQT
Sbjct: 361 PPQSTPTSQQQPASAQPVQPVNAPAQQPAVEQGKNVSSVSSGGGDWASFDSFGQQQTPQT 420
Query: 421 GNSVDPLESALAQLSFSETXXXXXXXXXXXXVMPTSVPNDXXXXXXXXXXXXXXXAPPGV 480
GNSVDPLESALAQLSFSET VMPTSVPND APPGV
Sbjct: 421 GNSVDPLESALAQLSFSETPSAPNSSAFPASVMPTSVPNDGGSSMMGQSHSSFFGAPPGV 480
Query: 481 SGHQASTGMSIHGSSVQQTGLAAPAAGLPFQVSANSRATSGIQEAAPNTDSRSIGRKELP 540
SGHQASTGMSIHGSSVQQTGLAAPAAGLPFQVSANSRATSGIQEAAPNTDSRSIGRKELP
Sbjct: 481 SGHQASTGMSIHGSSVQQTGLAAPAAGLPFQVSANSRATSGIQEAAPNTDSRSIGRKELP 540
Query: 541 ADIFTSLYPPGPQTIGGWQRTPQFGMGYAMPYQTAMGMQAYPQMXXXXXXXXXXXXXXXX 600
ADIFTSLYPPGPQTIGGWQRTPQFGMGYAMPYQTAMGMQAYPQM
Sbjct: 541 ADIFTSLYPPGPQTIGGWQRTPQFGMGYAMPYQTAMGMQAYPQMAFAQPAYQQPVYPQQQ 600
Query: 601 XXXXXXXKASNPFDLGNEPAPVQAHTQQPLPGPLGASAGMTPPGLLGTSSFGVLXXXXXX 660
KASNPFDLGNEPAPVQAHTQQPLPGPLGASAGMTPPGLLGTSSFGVL
Sbjct: 601 HAYPQPAKASNPFDLGNEPAPVQAHTQQPLPGPLGASAGMTPPGLLGTSSFGVLPQQPQQ 660
Query: 661 XXXXXXXXNHYMMQQVPNMSEQLPNTMLPMQQGGLGSLNMGFDQQAAPRYPQPSTPPSYG 720
NHYMMQQVPNMSEQLPNTMLPMQQGGLGSLNMGFDQQAAPRYPQPSTPPSYG
Sbjct: 661 LYQSPAPPNHYMMQQVPNMSEQLPNTMLPMQQGGLGSLNMGFDQQAAPRYPQPSTPPSYG 720
Query: 721 SVGGNPFG 728
SVGGNPFG
Sbjct: 721 SVGGNPFG 728
>Os03g0323500 Arf GTPase activating protein family protein
Length = 540
Score = 228 bits (581), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 104/160 (65%), Positives = 124/160 (77%), Gaps = 1/160 (0%)
Query: 2 ASRLKEDERNERIIRGLLKLPANKRCINCNNLGPQYVCTNFWTFICTNCSGAHREFTHRA 61
A+ KE+ERNER++RGLLKLP N+RCINCN LGPQYVCT+FWTF+C +CSG HREFTHR
Sbjct: 4 AASRKEEERNERVVRGLLKLPPNRRCINCNGLGPQYVCTSFWTFVCISCSGIHREFTHRV 63
Query: 62 KSVSMAKFTAQEVSALQEGGNERAREIFFKEWDAHRNSFPDSSNADKLRNFIKHVYVERR 121
KSVSM+ FT QEV ALQ GGN+RARE F KE+DA + PDSSN D LR FIK VYVERR
Sbjct: 64 KSVSMSTFTTQEVEALQNGGNQRARESFLKEFDAQKMRLPDSSNVDSLREFIKAVYVERR 123
Query: 122 YTGERSADRPPRGK-DDKDEYSENRRSDGNWGGSRSPPYN 160
Y G R ++RPPR K + K+ E+RR+ S+SPPY+
Sbjct: 124 YAGGRFSERPPRDKQNQKNNEQEHRRASSYHSFSQSPPYD 163
>Os01g0813900 Similar to ZIGA1 protein (Fragment)
Length = 801
Score = 214 bits (546), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 94/161 (58%), Positives = 123/161 (76%), Gaps = 2/161 (1%)
Query: 1 MASRLKEDERNERIIRGLLKLPANKRCINCNNLGPQYVCTNFWTFICTNCSGAHREFTHR 60
M SR +E+ERNE+IIRGL+KLP N++CINCN++GPQYVCTNFWTFIC +CSG HREFTHR
Sbjct: 1 MGSR-REEERNEKIIRGLMKLPPNRKCINCNSVGPQYVCTNFWTFICLSCSGIHREFTHR 59
Query: 61 AKSVSMAKFTAQEVSALQEGGNERAREIFFKEWDAHRNSFPDSSNADKLRNFIKHVYVER 120
KSVSMAKFT QEV +L++GGN+RAR+I+ K+WD R PD+SN D++R FI+ VYV++
Sbjct: 60 VKSVSMAKFTTQEVRSLEQGGNQRARDIYLKDWDWQRMRLPDNSNPDRIREFIRAVYVDK 119
Query: 121 RYTGERSADRPPRGKDD-KDEYSENRRSDGNWGGSRSPPYN 160
+Y G +S D+P + K + RR S+SPPY+
Sbjct: 120 KYAGGKSTDKPVNDSESVKSSENLTRRPSSYHSYSQSPPYD 160
>Os05g0534800 Arf GTPase activating protein family protein
Length = 550
Score = 214 bits (544), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 137/370 (37%), Positives = 182/370 (49%), Gaps = 68/370 (18%)
Query: 1 MASRLKEDERNERIIRGLLKLPANKRCINCNNLGPQYVCTNFWTFICTNCSGAHREFTHR 60
M SR+KE+ERNER IR LLKLP N+RCINCN+LGPQYVCT+F TF+C +CSG HREFTHR
Sbjct: 1 MGSRVKEEERNERAIRALLKLPGNRRCINCNSLGPQYVCTSFSTFVCVSCSGIHREFTHR 60
Query: 61 AKSVSMAKFTAQEVSALQEGGNERAREIFFKEWDAHRNSFPDSSNA-------------D 107
KS+SMAKFT+QEVSALQEGGNER +EI+ K WD PD +A D
Sbjct: 61 VKSISMAKFTSQEVSALQEGGNERGKEIYLKHWDFQGQPLPDIRSATKPDDYHRLLIDVD 120
Query: 108 KLRNFIKHVYVERRYTGERSADRPPRGKDDKDEYSENRRSDGNWGGSRSPPYNEXXXXXX 167
+LRNFIK VYV+RR+T ER + P+ K +D+ N D + G R P
Sbjct: 121 RLRNFIKIVYVDRRFTAERIGNHQPQAKGSRDDTYRNNNIDSSRGVQRGP---------- 170
Query: 168 XXXXXXXXXXXXXXXGERSPGYEHNDYKKSPRYFEVDDRNR--EDRSGKTTPVQRFEDRR 225
S + N+ K P +VD +NR +R T ++ D
Sbjct: 171 --YGGTSEDNHGPQHSTASTSEDQNNLNKHPVPAKVDQKNRTTTERENANTGKHQYLDGL 228
Query: 226 PSEPQRPDNGSPNYQKETDGS-SPVVRPVRDILGDNAPQLRVGEPPKPNVARTXXXXXXX 284
Q+ S N K+T S S VV P ++ P +R+ +PP+ + A T
Sbjct: 229 ----QKTGGSSENNLKDTTKSVSSVVEPSKETNRKVLP-IRLPDPPRSHKATTSTT---- 279
Query: 285 XXXXXXXXXXXXXXXXXXXXXXXNGTRTIEPPPQMQRTSTASSIGSSEGTSEQIKVASTI 344
P ++Q+ + S T+ +K+ +
Sbjct: 280 -------------------------------PAEIQKVVPPRAADPSSKTTTDVKLEISK 308
Query: 345 SLIDFSADPE 354
SLIDF +D E
Sbjct: 309 SLIDFDSDFE 318
>Os07g0563800 Arf GTPase activating protein family protein
Length = 476
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 82/156 (52%), Gaps = 13/156 (8%)
Query: 2 ASRLKE-DERNERIIRGLLKLPANKRCINCNNLGPQYVCTNFWTFICTNCSGAHREF--- 57
AS KE + ++++I+ GLL+LP N+ C +C + GP++ N FIC CSG HR
Sbjct: 5 ASVSKELNAKHKKILEGLLRLPENRECADCKSKGPRWASVNLGIFICMQCSGIHRSLGVH 64
Query: 58 THRAKSVSMAKFTAQEVSALQEGGNERAREIFFKEWDAHRNSFPDSSNADKLRNFIKHVY 117
+ +S ++ + ++V+ +Q GNE++ W+A P + + + NFI+ Y
Sbjct: 65 ISKVRSATLDTWLPEQVAFIQSMGNEKSNSY----WEAE---LPPNYDRVGIENFIRAKY 117
Query: 118 VERRYTGERSADRPPRGKDDKDEYSENRRSDGNWGG 153
++R+ + RP G +DE S ++ N GG
Sbjct: 118 EDKRWIPRNGSSRPSSGA--RDEKSSESQTSVNRGG 151
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.130 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 23,268,253
Number of extensions: 947655
Number of successful extensions: 2363
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 2360
Number of HSP's successfully gapped: 5
Length of query: 728
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 620
Effective length of database: 11,396,689
Effective search space: 7065947180
Effective search space used: 7065947180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 160 (66.2 bits)