BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0198000 Os02g0198000|AK067695
(380 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0198000 Protein of unknown function DUF1677, Oryza sat... 702 0.0
Os12g0139800 165 4e-41
Os11g0143700 159 2e-39
Os10g0338000 Protein of unknown function DUF1677, Oryza sat... 136 3e-32
Os01g0148500 Protein of unknown function DUF1677, Oryza sat... 127 1e-29
Os04g0211900 Protein of unknown function DUF1677, Oryza sat... 117 2e-26
Os12g0467200 Protein of unknown function DUF1677, Oryza sat... 89 5e-18
Os04g0220500 Protein of unknown function DUF1677, Oryza sat... 89 6e-18
Os01g0148700 Protein of unknown function DUF1677, Oryza sat... 87 3e-17
Os12g0466900 83 3e-16
>Os02g0198000 Protein of unknown function DUF1677, Oryza sativa family protein
Length = 380
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/380 (91%), Positives = 347/380 (91%)
Query: 1 MGXXXXXXXXXXXDGTDLLEAEPLLDDSHLMTVRDPLPAAYIAVCRRDWYSHSYYRLYKV 60
MG DGTDLLEAEPLLDDSHLMTVRDPLPAAYIAVCRRDWYSHSYYRLYKV
Sbjct: 1 MGRRRRHRRHHRRDGTDLLEAEPLLDDSHLMTVRDPLPAAYIAVCRRDWYSHSYYRLYKV 60
Query: 61 EDDXXXXXXXXXXVTKQVLHRFAHLPTDVACKTXXXXXXXXXXXXGGNPGGTVLFDTETR 120
EDD VTKQVLHRFAHLPTDVACKT GGNPGGTVLFDTETR
Sbjct: 61 EDDSSSSSSPSSPVTKQVLHRFAHLPTDVACKTVVSVRSRWIVSVGGNPGGTVLFDTETR 120
Query: 121 RVITGPKLLSAKLSPVAAAVGDRIYVLSSRPQYFEPWFEVLDLSRATVVATADGRHTLDG 180
RVITGPKLLSAKLSPVAAAVGDRIYVLSSRPQYFEPWFEVLDLSRATVVATADGRHTLDG
Sbjct: 121 RVITGPKLLSAKLSPVAAAVGDRIYVLSSRPQYFEPWFEVLDLSRATVVATADGRHTLDG 180
Query: 181 CSWEALPDPICFPCVLSPAGYLAPPLILVTSYVLFLPYLLVSVNNMGKMTTYAFDTGTHR 240
CSWEALPDPICFPCVLSPAGYLAPPLILVTSYVLFLPYLLVSVNNMGKMTTYAFDTGTHR
Sbjct: 181 CSWEALPDPICFPCVLSPAGYLAPPLILVTSYVLFLPYLLVSVNNMGKMTTYAFDTGTHR 240
Query: 241 WHKLYDYGLPFFGSATPLVGIRLVSSAPHLKLSVTEFPVKTEAREEVGVGEALCLASMED 300
WHKLYDYGLPFFGSATPLVGIRLVSSAPHLKLSVTEFPVKTEAREEVGVGEALCLASMED
Sbjct: 241 WHKLYDYGLPFFGSATPLVGIRLVSSAPHLKLSVTEFPVKTEAREEVGVGEALCLASMED 300
Query: 301 EGSFSCITFRLDDREHHMSYDKDIHEFYPRKMYLNLTTYKIVEGEKTDMDIVVRCKRDKA 360
EGSFSCITFRLDDREHHMSYDKDIHEFYPRKMYLNLTTYKIVEGEKTDMDIVVRCKRDKA
Sbjct: 301 EGSFSCITFRLDDREHHMSYDKDIHEFYPRKMYLNLTTYKIVEGEKTDMDIVVRCKRDKA 360
Query: 361 LKIFSSHGFSSPPIAFALSI 380
LKIFSSHGFSSPPIAFALSI
Sbjct: 361 LKIFSSHGFSSPPIAFALSI 380
>Os12g0139800
Length = 396
Score = 165 bits (418), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 130/377 (34%), Positives = 182/377 (48%), Gaps = 45/377 (11%)
Query: 39 AAYIAVCRRDWYSHSY-YRLYKVE-DDXXXXXXXXXXVTKQVLHRFAHLPTDVACKTXXX 96
+ Y+ C DW +S Y +Y V ++ L R LPT K+
Sbjct: 25 SVYLVACHWDWSRYSKPYSVYNVGVTATATATSSPPQAKRKRLRRITRLPTAAGGKSFTS 84
Query: 97 XXX---XXXXXXGGNPGGTVLFDTETRRVITGPKLLSAKLSPVAAAVGDRIYVLSSRPQY 153
GG+PG TV+FDT T +V+ GP L SAK P +VGD++Y +S P +
Sbjct: 85 VRSIHRAWIVGVGGDPGDTVIFDTRTEKVVHGPALNSAKWCPALMSVGDKVYAMSKSPSW 144
Query: 154 -----FEPWFEVLDLSRATVVATADGR-HTLDGCSWEALPDPICFPCVLSPAGYLAPPLI 207
F PWFE+LDLS++ VVA GR + L+GCSW LP P CFP L P Y P++
Sbjct: 145 IADPDFPPWFELLDLSQSKVVAATAGRGYHLEGCSWIKLPHPPCFPWKLRPVDYTLLPVV 204
Query: 208 LVTSYVLFLPYLLVSVNNMGKMTTYAFDTGTHRWHKLYDYGLPFFGSATPLVGIRLVSSA 267
+V SYV+ Y+LVS N TYAFDT + +WHK+ D LPF G A P + L S
Sbjct: 205 IVMSYVVVDAYILVSFNQ--PWGTYAFDTNSIKWHKVDDKRLPFTGCAAPHGSVFLGLSK 262
Query: 268 PHLKLSVTEFPVKTEARE---------------EVGVGEALCLASMEDEGSFSCITFRLD 312
+ ++ V T +E E V C S+ED G F + F LD
Sbjct: 263 DNGPINAYRINVTTSDKEYDPCLSIVVLPVKYMEHEVDAGSCFFSLED-GLFCSLRFSLD 321
Query: 313 DREHHMSYDKDIHEFYPRKMYLNLTTYKI-----VEGEKTDM-----DIVVRCKRDKALK 362
S + ++ +P K +++L TY+ +E + + ++ V + ++A K
Sbjct: 322 SSSVIRSKNLEV---FPTKAHVDLRTYQTENTSPLEAPEETLLAVKPEVTVCSQWEQAFK 378
Query: 363 I-FSSHGFSSPPIAFAL 378
I SSHGFS P AFAL
Sbjct: 379 ISCSSHGFS--PFAFAL 393
>Os11g0143700
Length = 435
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 115/328 (35%), Positives = 159/328 (48%), Gaps = 32/328 (9%)
Query: 39 AAYIAVCRRDWYSHSY-YRLYKVE-DDXXXXXXXXXXVTKQVLHRFAHLPTDVACKTXXX 96
+ Y+ C DW +S Y +Y V ++ L R LPT K+
Sbjct: 88 SVYLVACHWDWSRYSKPYSVYNVGVTATATATSSPPQAKRKRLRRITRLPTAAGGKSFTS 147
Query: 97 XXXXXXX---XXGGNPGGTVLFDTETRRVITGPKLLSAKLSPVAAAVGDRIYVLSSRPQY 153
GG+PG T++FDT T +VI GP L SAK P AVGD++Y +S P +
Sbjct: 148 VRSIHRAWIVGVGGDPGDTIIFDTRTEKVIHGPALNSAKWCPALMAVGDKVYAMSKSPSW 207
Query: 154 -----FEPWFEVLDLSRATVVATADGR-HTLDGCSWEALPDPICFPCVLSPAGYLAPPLI 207
F PWFE+LDLS++ VVA GR + L+GCSW LP P CFP L P Y P++
Sbjct: 208 IADPDFPPWFELLDLSQSKVVAATAGRGYHLEGCSWIKLPHPPCFPWKLRPVDYTLLPVV 267
Query: 208 LVTSYVLFLPYLLVSVNNMGKMTTYAFDTGTHRWHKLYDYGLPFFGSATPLVGIRLVSSA 267
+V SYV+ Y+LVS N TYAFDT + +WHK+ + LPF G A P + L S
Sbjct: 268 IVMSYVVVDAYILVSFNQ--PWGTYAFDTNSIKWHKVDNKKLPFTGCAAPHGSVFLGLSK 325
Query: 268 PHLKLSVTEFPVKTEARE---------------EVGVGEALCLASMEDEGSFSCITFRLD 312
+ ++ V T + E V C S+ED G F ++F LD
Sbjct: 326 DNGPINAYRINVTTSDKNHDPCLSIVVLPVKYMEHEVDAGSCFFSLED-GLFCSLSFSLD 384
Query: 313 DREHHMSYDKDIHEFYPRKMYLNLTTYK 340
+S + D F+P K +++L TY+
Sbjct: 385 SNSVILSKNLD---FFPTKAHVDLRTYQ 409
>Os10g0338000 Protein of unknown function DUF1677, Oryza sativa family protein
Length = 394
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 104/185 (56%), Gaps = 12/185 (6%)
Query: 106 GGNPG------GTVLFDTETRRVITGPKLLSAKLSPVAAAVGDRIYVLSSRPQY-----F 154
GGN G T++FDT +V++GPKLLS KL P+ +G+RIY L+ P F
Sbjct: 84 GGNTGIRDYGPETIVFDTNACKVVSGPKLLSTKLCPILVPMGERIYALAGMPCVTGDINF 143
Query: 155 EPWFEVLDLSRATVVATADGRHTLDGCSWEALPDPICFPCVLSPAGYLAPPLILVTSYVL 214
PWFEVLDLS A V+ A G LD C W+ LP P FP L+P Y+ PP+ V S+V
Sbjct: 144 VPWFEVLDLSMARVIDNASGCCLLD-CEWKPLPRPPFFPWDLTPTDYIFPPVDTVKSHVA 202
Query: 215 FLPYLLVSVNNMGKMTTYAFDTGTHRWHKLYDYGLPFFGSATPLVGIRLVSSAPHLKLSV 274
Y+L+S+ G+ T+ FDT T +W KL D LPF G A PL G L + + +
Sbjct: 203 VGSYILLSITGHGQKGTHMFDTETQQWAKLDDKDLPFIGRAIPLQGTLLFLGSSNTSDEI 262
Query: 275 TEFPV 279
T + +
Sbjct: 263 TAYKI 267
>Os01g0148500 Protein of unknown function DUF1677, Oryza sativa family protein
Length = 399
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/203 (40%), Positives = 108/203 (53%), Gaps = 36/203 (17%)
Query: 112 TVLFDTETRRVITGPKLLSAKLSPVAAAVGDRIYVLSSRPQY-----FEPWFEVLDLSRA 166
T++FDTETR VI GP LLS KL PV +G +IY L+ P F PWFEVLDLS+A
Sbjct: 119 TIVFDTETRAVIRGPNLLSTKLHPVVLTIGHKIYALARYPSVTGQLDFVPWFEVLDLSQA 178
Query: 167 TVVATADGRHTLDGCSWEALPDPICFPCVLSPAGYLAPPLILVTSYVLFLPYLLVSVNNM 226
VV DG L+ C W+ LP P FP L+P YL+PP++ V SYV +LVS++
Sbjct: 179 RVV---DGH--LESCEWKPLPRPPFFPWDLTPLQYLSPPMVTVESYVALASCILVSLSQ- 232
Query: 227 GKMTTYAFDTGTHRWHKLYDYGLPFFGSATP----LVGI------------------RLV 264
+ T+ FD +W KL D LPF A P +G+ R
Sbjct: 233 -QEGTHMFDVDKEQWSKLDDNSLPFVRGAVPHGPIFLGLSRAKKIITAYNITVVCQPRSG 291
Query: 265 SSAPHLKLSVTEFPVKTEAREEV 287
+AP LS+ EFPV ++ EE+
Sbjct: 292 GTAP--SLSIVEFPVVSDMEEEI 312
>Os04g0211900 Protein of unknown function DUF1677, Oryza sativa family protein
Length = 428
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/158 (46%), Positives = 91/158 (57%), Gaps = 9/158 (5%)
Query: 108 NPGGTVLFDTETRRVITGPKLLSAKLSPVAAAVGDRIYVLSSRPQY-----FEPWFEVLD 162
P T++FDT R+ I+GPKLLS KL P+ GD+IY L+ RP F PWFEVLD
Sbjct: 104 GPDETIVFDTVMRKEISGPKLLSTKLCPILLPFGDKIYALARRPAVTGDVNFVPWFEVLD 163
Query: 163 LSRATVVATADGRHTLDGCSWEALPDPICFPCVLSPAGYLAPPLILVTSYVLFLPYLLVS 222
LS A V A R L GC W LP P FP L+P Y+ PP++ V S+V Y+L+S
Sbjct: 164 LSVARVDDDASDR--LVGCEWRPLPRPPFFPWDLTPTDYIFPPVVTVKSHVAVASYILLS 221
Query: 223 VNNMGKMTTYAFDTGTHRWHKLYDYGLPFFGSATPLVG 260
+ G+ T+ FD T W KL D LPF G A PL G
Sbjct: 222 IT--GQTGTHMFDVETEEWRKLDDNDLPFHGRAVPLQG 257
>Os12g0467200 Protein of unknown function DUF1677, Oryza sativa family protein
Length = 408
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 102/245 (41%), Gaps = 63/245 (25%)
Query: 112 TVLFDTETRRVITGPKLLSAKLSPVAAAVGD---------RIYVLSS-----RPQYFEPW 157
T ++D ET GP+L+ K++PV ++ D +Y LS RP FEPW
Sbjct: 110 TTVYDPETSTERGGPRLIFPKVNPVLISISDDGGGVVGGGTLYALSRTPAVVRPLDFEPW 169
Query: 158 FEVLDLSRATVVATADGRHTLDGCSWEALPDPICFPCVLSPAGYLAPPLILVTSYVLFLP 217
F VLD D HT+ W LP P FPC L+P +L PP + V +Y L
Sbjct: 170 FFVLD----------DLSHTV----WRELPSPPLFPCRLNPLEFLDPPKLRVAAYALVGS 215
Query: 218 YLLVSVN--------NMGKMTTYAFDTGTHRWHKLYDYGLPFFGSATPL----------- 258
++L+SV+ T AFD T +W ++D LPF G A PL
Sbjct: 216 HILLSVSVQQLQPQQQQEDKGTCAFDMDTEQWEMVHDSNLPFDGQALPLGSDDDHRFVAV 275
Query: 259 -------------VGIRLVSSAPHLKLSVTEFPVKTEAREEVGVGEALCLASMEDEGSFS 305
VGI V+ L + V + ++ + G LC +GSF+
Sbjct: 276 ASAAADVTVYRMVVGISAVTGKKELTIVALRVVVASNSKCRIVPGNLLCAMG---KGSFA 332
Query: 306 CITFR 310
FR
Sbjct: 333 SFEFR 337
>Os04g0220500 Protein of unknown function DUF1677, Oryza sativa family protein
Length = 1510
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 78/162 (48%), Gaps = 22/162 (13%)
Query: 112 TVLFDTETRRVITGPKLLSAKLSPVAAAVGDRIYVLSSRPQY-----FEPWFEVLDLSRA 166
T ++D +T V G +L+ K++PV + G ++Y +S P FEPWF VLD
Sbjct: 490 TTVYDPKTSTVRAGCRLVFPKVNPVLVSHGGKLYAVSCCPSVVNGRDFEPWFLVLD---- 545
Query: 167 TVVATADGRHTLDGCSWEALPDPICFPCVLSPAGYLAPPLILVTSYVLFLPYLL--VSVN 224
+L W LP P FPC L+P Y PP + V +Y + ++L VSV
Sbjct: 546 ----------SLGYFGWRELPPPPIFPCRLNPLEYRDPPAVRVAAYAIVGSHILLSVSVQ 595
Query: 225 NMGK-MTTYAFDTGTHRWHKLYDYGLPFFGSATPLVGIRLVS 265
G+ T AFD +W + D LPF G A PL R VS
Sbjct: 596 QQGQDKGTCAFDMDAEQWEMVLDTNLPFTGQAVPLGDHRFVS 637
>Os01g0148700 Protein of unknown function DUF1677, Oryza sativa family protein
Length = 385
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 75/154 (48%), Gaps = 12/154 (7%)
Query: 112 TVLFDTETRRVITGPKLLSAKLSPVAAAVGDRIYVLSSRPQY-----FEPWFEVLDLSRA 166
T ++D +T I GP L+ KL PV G ++Y LS P F PWF LDL+
Sbjct: 102 TTVYDPKTSMEIPGPFLVEPKLRPVLIPRGSKLYALSRTPSVVPGLDFLPWFVYLDLNY- 160
Query: 167 TVVATADGRHTLDGCSWEALPDPICFPCVLSPAGYLAPPLILVTSYVLFLPYLLVSVNNM 226
+VA D R W LP P FP L+P Y PP + V SY + ++L+SV
Sbjct: 161 VLVAPHDAR----TMGWHHLPPPPIFPVRLNPLEYRDPPEVRVASYAVVGSHILLSVQQ- 215
Query: 227 GKMTTYAFDTGTHRWHKLYDYGLPFFGSATPLVG 260
T AFD T++W + LPF G A PL G
Sbjct: 216 -DKGTCAFDMDTNQWDMVDANNLPFIGKAVPLGG 248
>Os12g0466900
Length = 237
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 102/239 (42%), Gaps = 60/239 (25%)
Query: 112 TVLFDTETRRVITGPKLLSAKLSPVAAAVGD---------RIYVLSSRPQY-----FEPW 157
T ++D E GP+L+ KL+PV ++ D ++Y LS P FEPW
Sbjct: 18 TTVYDPEASTERGGPRLVFPKLNPVLISISDDGGGGGGGGKLYALSRTPAVVRQLDFEPW 77
Query: 158 FEVLDLSRATVVATADGRHTLDGCSWEALPDPICFPCVLSPAGYLAPPLILVTSYVLFLP 217
F VLD D HT+ W LP P FPC L+P +L PP + VT+Y L
Sbjct: 78 FFVLD----------DLSHTV----WRQLPSPPLFPCRLNPLEFLDPPKVRVTAYALVGS 123
Query: 218 YLLVSVNNMGKMT-------TYAFDTGTHRWHKLYDYGLPFFGSATPL------------ 258
++L+SV+ T AFD T +W ++D LPF G A PL
Sbjct: 124 HILLSVSVQPPQQQQQDHKGTCAFDMDTEQWEMVHDTNLPFDGQALPLGSDDHRFVAAAA 183
Query: 259 --------VGIRLVSSAPHLKLSVTEFPVKTEAREEVGVGEALCLASMEDEGSFSCITF 309
VGI V+ +L++ E V + + G LC +GSF+ F
Sbjct: 184 DVAVYRMVVGISAVTGKK--ELTIVELRVVVASNCRIVPGNLLCAMG---KGSFASFEF 237
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.139 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,860,539
Number of extensions: 535479
Number of successful extensions: 995
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 973
Number of HSP's successfully gapped: 11
Length of query: 380
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 277
Effective length of database: 11,657,759
Effective search space: 3229199243
Effective search space used: 3229199243
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)