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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0467200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1677, Oryza sativa family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.72 (0.041) R2 : 0.348
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.997 (0.0975) R2dC : 0.15 R2C : 0.15
β3 : 2.15 (0.184) R2dE : 0.21 R2E : 0.181
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.265 (0.089) R2dN8 : 0.0178 R2N8 : -0.0181
σ : 0.763
deviance : 268.47
__
_____
C
peak time of C : 13.2
E
wheather : temperature
threshold : 32.2
memory length : 540
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
254.05 0.749 4.76 0.205 0.781 2.35 -0.372 2.6 0.254 13 31.68 717 -- --
258.65 0.749 4.69 0.673 0.924 2.51 -0.0356 -- 0.394 13.4 32.12 588 -- --
254.55 0.743 4.76 0.211 0.795 2.34 -- 2.51 0.252 13 31.7 700 -- --
258.48 0.749 4.7 0.657 0.946 2.43 -- -- 0.375 13.4 32.2 584 -- --
282.77 0.783 4.75 0.34 -- 2.75 -- 2.34 0.326 -- 31.4 863 -- --
331.1 0.853 4.77 0.0485 1.13 -- 0.252 -- -0.0279 11.2 -- -- -- --
331.37 0.852 4.77 0.0591 1.13 -- -- -- -0.0267 11.2 -- -- -- --
288.41 0.791 4.69 0.798 -- 2.77 -- -- 0.446 -- 32 874 -- --
268.47 0.763 4.72 -- 0.997 2.15 -- -- 0.265 13.2 32.2 540 -- --
411.51 0.948 4.8 0.0317 -- -- -- -- -0.0367 -- -- -- -- --
331.46 0.852 4.77 -- 1.13 -- -- -- -0.0333 11.2 -- -- -- --
303.16 0.811 4.72 -- -- 2.45 -- -- 0.302 -- 32.4 851 -- --
411.53 0.947 4.8 -- -- -- -- -- -0.0402 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 248.53 temperature 30 720 < th dose dependent rect. 16 19
8 249.43 temperature 10 720 > th dose dependent rect. 17 22
17 250.45 temperature 10 720 > th dose dependent rect. 17 16
31 251.16 temperature 20 1440 > th dose dependent rect. 18 11
32 251.18 temperature 25 4320 < th dose independent rect. 19 5
47 251.63 temperature 20 1440 > th dose dependent rect. 23 10
60 251.92 temperature 25 4320 < th dose independent rect. 21 1
70 252.06 temperature 25 4320 > th dose independent rect. 19 5
78 252.12 temperature 20 1440 > th dose dependent sin 10 NA
82 252.13 wind 9 43200 > th dose dependent rect. 18 13
87 252.23 temperature 25 4320 > th dose independent rect. 20 2
89 252.25 temperature 20 1440 > th dose dependent rect. 23 6
96 252.34 temperature 20 1440 > th dose dependent rect. 23 3
98 252.39 temperature 30 720 < th dose dependent sin 11 NA
131 252.71 wind 9 43200 > th dose independent rect. 18 14
140 252.80 temperature 20 1440 > th dose dependent rect. 1 1
159 252.97 temperature 15 720 > th dose dependent rect. 11 22
167 253.10 temperature 25 4320 > th dose dependent rect. 7 1
183 253.32 temperature 20 1440 > th dose dependent rect. 3 1
194 253.56 temperature 10 720 > th dose dependent sin 11 NA
251 254.34 temperature 30 1440 < th dose dependent rect. 17 9
271 254.57 wind 9 43200 < th dose independent rect. 18 14
284 254.67 temperature 30 1440 < th dose dependent rect. 18 1
288 254.75 temperature 30 1440 < th dose dependent rect. 17 5
289 254.75 temperature 10 720 > th dose dependent rect. 8 23
295 254.82 temperature 10 720 > th dose dependent rect. 1 23
310 254.97 temperature 30 720 < th dose dependent rect. 5 23
315 255.01 temperature 30 720 < th dose dependent no NA NA
327 255.08 temperature 30 720 < th dose dependent rect. 20 23
335 255.15 temperature 15 720 > th dose dependent no NA NA
347 255.19 temperature 30 720 < th dose dependent rect. 22 23
392 255.45 temperature 30 720 < th dose dependent rect. 7 23
394 255.47 temperature 20 1440 > th dose dependent rect. 20 1
511 256.19 temperature 30 4320 < th dose dependent rect. 21 1
529 256.25 temperature 10 4320 > th dose dependent rect. 21 1
545 256.31 temperature 15 720 > th dose dependent rect. 21 23