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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0338000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1677, Oryza sativa family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.85 (0.0158) R2 : 0.00049
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0158 (0.0333) R2dN8 : 0.000633 R2N8 : 0.00049
σ : 0.298
deviance : 40.81
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
39.15 0.294 2.9 -0.353 0.0262 1.5 -0.36 -7.25 -0.0136 3.47 998.2 387 -- --
39.52 0.295 2.85 -0.0695 0.0299 0.216 -0.346 -- -0.014 3.52 998.2 387 -- --
39.49 0.293 2.9 -0.35 0.0364 1.46 -- -6.92 -0.00871 6.25 998.3 493 -- --
39.72 0.294 2.85 -0.0662 0.0288 0.263 -- -- -0.0143 3.46 998.3 381 -- --
39.57 0.293 2.9 -0.346 -- 1.45 -- -6.94 -0.0106 -- 998.3 493 -- --
40.34 0.298 2.85 -0.0466 0.0275 -- -0.351 -- -0.0228 3.43 -- -- -- --
40.68 0.299 2.85 -0.0402 0.0418 -- -- -- -0.021 6.53 -- -- -- --
39.76 0.294 2.85 -0.0636 -- 0.259 -- -- -0.0121 -- 998.3 381 -- --
39.79 0.294 2.85 -- 0.0434 0.275 -- -- 0.0017 6.05 998.2 451 -- --
40.77 0.298 2.85 -0.0392 -- -- -- -- -0.0201 -- -- -- -- --
40.72 0.298 2.85 -- 0.0412 -- -- -- -0.0165 6.59 -- -- -- --
39.88 0.294 2.85 -- -- 0.252 -- -- -0.00302 -- 998.3 451 -- --
40.81 0.298 2.85 -- -- -- -- -- -0.0158 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.07 humidity 80.0 30 < th dose independent rect. 1 1
11 27.07 humidity 80.0 30 < th dose dependent rect. 1 1
46 33.29 atmosphere 1005.0 30 > th dose dependent rect. 1 1
50 33.88 atmosphere 1005.0 30 > th dose independent rect. 1 1
54 34.20 temperature 20.0 90 < th dose independent rect. 1 1
81 35.24 wind 3.0 10 < th dose independent rect. 1 1
97 36.22 temperature 25.0 10 < th dose dependent rect. 1 1
98 36.22 temperature 25.0 90 < th dose dependent rect. 1 1
112 36.40 wind 5.0 10 < th dose dependent rect. 1 1
130 36.67 atmosphere 1000.0 30 > th dose independent rect. 2 23
150 37.01 precipitation 0.1 10 < th dose independent rect. 1 1
152 37.01 precipitation 0.1 10 < th dose dependent rect. 1 1
162 37.12 wind 9.0 1440 < th dose independent rect. 2 1
165 37.12 temperature 10.0 1440 > th dose independent rect. 2 1
169 37.12 temperature 30.0 1440 < th dose independent rect. 2 1
173 37.12 humidity 50.0 1440 > th dose independent rect. 2 1
183 37.12 atmosphere 995.0 1440 > th dose independent rect. 2 1
184 37.12 radiation 1.0 1440 < th dose independent rect. 2 1
204 37.12 temperature 10.0 1440 > th dose independent rect. 3 23
207 37.12 precipitation 0.1 30 < th dose independent rect. 2 23
208 37.12 radiation 1.0 1440 < th dose dependent rect. 2 1
228 37.12 precipitation 0.1 30 < th dose dependent rect. 2 23
229 37.13 temperature 10.0 30 > th dose independent rect. 1 1
232 37.13 humidity 50.0 30 > th dose independent rect. 1 1
235 37.13 atmosphere 995.0 30 > th dose independent rect. 1 1
236 37.13 atmosphere 1010.0 30 < th dose independent rect. 1 1
238 37.13 radiation 1.0 30 < th dose independent rect. 1 1
243 37.13 temperature 10.0 30 > th dose independent rect. 2 23
245 37.13 radiation 1.0 30 < th dose dependent rect. 1 1
283 37.19 wind 9.0 30 < th dose independent rect. 2 23
300 37.33 atmosphere 1005.0 10 < th dose dependent rect. 5 1
304 37.37 humidity 80.0 1440 > th dose independent rect. 24 2
333 37.47 wind 1.0 90 > th dose independent rect. 1 1
376 37.60 temperature 30.0 90 < th dose independent rect. 2 23
412 37.79 atmosphere 1000.0 90 < th dose dependent rect. 4 10
421 37.85 temperature 30.0 30 > th dose dependent rect. 18 16
422 37.86 atmosphere 1000.0 90 < th dose independent rect. 4 1
423 37.86 atmosphere 1000.0 10 < th dose independent rect. 5 1
433 37.86 humidity 50.0 30 > th dose independent rect. 2 23
448 37.87 atmosphere 1000.0 90 > th dose independent rect. 24 15
453 37.89 temperature 10.0 30 > th dose dependent rect. 1 1
456 37.90 atmosphere 1000.0 10 > th dose independent rect. 1 15
505 37.97 temperature 25.0 30 > th dose dependent rect. 5 1
647 38.08 temperature 30.0 1440 < th dose independent rect. 2 7
667 38.16 radiation 40.0 30 < th dose dependent rect. 15 10
670 38.17 radiation 20.0 30 < th dose dependent rect. 15 10
672 38.19 humidity 60.0 10 > th dose independent rect. 17 8
717 38.20 humidity 50.0 30 > th dose independent rect. 1 16
735 38.21 wind 3.0 10 < th dose independent rect. 1 5
736 38.21 temperature 30.0 90 < th dose independent rect. 15 9
737 38.21 temperature 30.0 10 < th dose independent rect. 16 9
747 38.22 radiation 10.0 30 < th dose independent rect. 16 9
749 38.22 temperature 30.0 90 > th dose dependent rect. 8 1
768 38.23 temperature 30.0 90 > th dose independent rect. 8 1
781 38.23 atmosphere 1000.0 90 < th dose independent rect. 4 10
786 38.23 precipitation 0.1 10 < th dose independent rect. 1 15
804 38.23 precipitation 0.1 10 < th dose dependent rect. 1 15
809 38.24 wind 1.0 30 > th dose independent rect. 1 16
825 38.25 temperature 30.0 10 > th dose dependent rect. 9 1
879 38.26 temperature 30.0 30 > th dose independent rect. 18 16
882 38.26 atmosphere 1000.0 90 < th dose dependent rect. 4 6
885 38.27 temperature 25.0 30 > th dose independent rect. 5 1
888 38.27 temperature 30.0 10 < th dose independent rect. 1 15
893 38.27 atmosphere 1005.0 10 < th dose dependent rect. 5 5
918 38.28 atmosphere 1000.0 10 > th dose independent rect. 16 9
919 38.28 precipitation 0.1 10 < th dose independent rect. 16 9
928 38.28 precipitation 0.1 10 < th dose dependent rect. 16 9
932 38.29 wind 9.0 10 < th dose independent rect. 16 9
933 38.29 temperature 10.0 10 > th dose independent rect. 16 9
936 38.29 radiation 40.0 10 < th dose independent rect. 16 9
937 38.29 temperature 10.0 10 > th dose independent rect. 1 15
942 38.29 atmosphere 1015.0 10 < th dose independent rect. 1 15
951 38.30 atmosphere 1000.0 720 < th dose dependent rect. 5 1
954 38.30 temperature 25.0 10 < th dose dependent rect. 1 5
959 38.31 atmosphere 1000.0 720 < th dose independent rect. 3 3
967 38.31 temperature 25.0 90 < th dose dependent rect. 24 5
974 38.31 atmosphere 995.0 30 > th dose dependent rect. 2 23