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Os02g0198000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1677, Oryza sativa family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.16 (0.0508) R2 : 0.585
β1 : -4.42 (0.189) R2dD : 0.547 R2D : 0.345
β2 : -- (--) R2dC : -- R2C : --
β3 : -3.45 (0.234) R2dE : 0.225 R2E : 0.0283
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.866 (0.113) R2dN8 : 0.0798 R2N8 : -0.0736
σ : 0.939
deviance : 406.26
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C
peak time of C : --
E
wheather : temperature
threshold : 26.3
memory length : 497
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 22.5
open length of G : 12.9

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
377.22 0.913 6.19 -4.89 1.54 -4.76 -2.98 5.39 -1 11.5 29.87 620 23.6 11
391.4 0.921 6.15 -4.51 1.36 -4.76 0.385 -- -0.922 11.2 29.26 609 23.3 11.4
389.2 0.919 6.15 -4.5 1.51 -4.49 -- 2 -0.86 10.5 30.79 541 23.5 11.9
391.4 0.921 6.15 -4.44 1.38 -4.72 -- -- -0.905 11.3 29.35 611 23.5 11.3
399.03 0.93 6.17 -4.6 -- -3.21 -- 1.9 -0.875 -- 26.6 497 22.3 12.9
530.33 1.08 6.07 -3.83 1.04 -- -1.81 -- -0.323 20 -- -- -- --
540.16 1.09 6.07 -3.78 1.04 -- -- -- -0.325 20.1 -- -- -- --
406.26 0.939 6.16 -4.42 -- -3.45 -- -- -0.866 -- 26.3 497 22.5 12.9
868.37 1.37 5.99 -- 1.63 -3.58 -- -- -0.167 11.4 34.72 667 0.0167 8.25
599.33 1.14 6.05 -3.79 -- -- -- -- -0.337 -- -- -- -- --
916.63 1.42 5.98 -- 1.06 -- -- -- 0.0963 19.8 -- -- -- --
873.36 1.38 6.01 -- -- -2.33 -- -- -0.156 -- 27.6 427 0.0389 9.28
977.97 1.46 5.95 -- -- -- -- -- 0.083 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 373.68 humidity 80.0 43200 > th dose independent rect. 16 4
2 374.08 humidity 80.0 43200 < th dose independent rect. 16 4
3 374.93 humidity 80.0 43200 > th dose dependent rect. 19 2
4 375.00 humidity 80.0 43200 > th dose dependent rect. 18 4
14 376.77 humidity 80.0 43200 > th dose independent rect. 17 1
20 377.50 humidity 90.0 43200 > th dose dependent rect. 6 1
31 378.44 humidity 90.0 43200 > th dose independent rect. 6 1
35 378.67 radiation 1.0 43200 < th dose independent rect. 17 1
37 378.70 precipitation 0.1 43200 > th dose dependent rect. 2 6
40 378.96 precipitation 0.1 43200 > th dose independent rect. 2 6
42 379.14 precipitation 0.1 43200 < th dose independent rect. 2 6
43 379.14 precipitation 0.1 43200 < th dose dependent rect. 2 6
45 379.32 radiation 1.0 43200 > th dose independent rect. 17 1
47 379.33 temperature 30.0 43200 < th dose dependent rect. 19 1
48 379.34 temperature 10.0 43200 > th dose dependent rect. 19 1
82 380.58 wind 3.0 43200 < th dose dependent rect. 21 3
86 380.61 precipitation 0.1 43200 > th dose dependent rect. 23 9
90 380.76 humidity 50.0 43200 > th dose dependent rect. 21 1
96 380.98 temperature 30.0 43200 < th dose dependent rect. 6 1
97 380.99 precipitation 0.1 43200 > th dose dependent rect. 17 3
107 381.14 temperature 10.0 43200 > th dose dependent rect. 6 1
121 381.26 precipitation 0.1 43200 < th dose independent rect. 23 9
122 381.26 precipitation 0.1 43200 < th dose dependent rect. 23 9
124 381.31 radiation 1.0 43200 < th dose independent rect. 17 13
129 381.38 radiation 1.0 43200 > th dose independent rect. 17 13
131 381.39 precipitation 0.1 43200 > th dose independent rect. 23 9
132 381.41 precipitation 0.1 43200 > th dose independent rect. 17 4
137 381.52 temperature 30.0 720 < th dose dependent rect. 23 11
144 381.59 precipitation 0.1 43200 < th dose independent rect. 17 4
145 381.59 precipitation 0.1 43200 < th dose dependent rect. 17 4
164 381.96 humidity 80.0 43200 < th dose independent rect. 12 9
168 382.01 temperature 30.0 720 < th dose dependent rect. 22 13
202 382.35 precipitation 0.1 43200 > th dose independent rect. 17 7
215 382.46 precipitation 0.1 43200 < th dose independent rect. 17 7
216 382.46 precipitation 0.1 43200 < th dose dependent rect. 17 7
244 382.70 humidity 90.0 43200 > th dose dependent rect. 6 7
250 382.79 humidity 90.0 43200 < th dose dependent rect. 17 2
254 382.82 temperature 30.0 43200 < th dose dependent rect. 17 15
286 382.98 temperature 10.0 43200 > th dose dependent rect. 16 16
298 383.01 humidity 90.0 43200 < th dose dependent rect. 17 5
348 383.22 precipitation 0.1 43200 > th dose dependent rect. 17 10
366 383.28 humidity 90.0 43200 < th dose independent rect. 6 2
416 383.42 radiation 1.0 43200 < th dose independent rect. 1 5
428 383.45 radiation 1.0 43200 < th dose independent rect. 21 9
442 383.50 radiation 1.0 43200 < th dose independent rect. 19 11
443 383.50 temperature 10.0 43200 > th dose dependent sin 15 NA
444 383.50 temperature 30.0 43200 < th dose dependent sin 13 NA
458 383.52 temperature 10.0 43200 > th dose dependent rect. 4 18
521 383.66 precipitation 0.1 43200 > th dose dependent rect. 13 8
540 383.70 radiation 1.0 43200 > th dose independent rect. 4 2
644 383.88 humidity 80.0 43200 > th dose dependent rect. 6 17
685 383.97 temperature 10.0 43200 > th dose dependent no NA NA
753 384.10 radiation 1.0 14400 < th dose independent rect. 8 10
766 384.11 precipitation 0.1 43200 > th dose dependent rect. 13 14
792 384.16 temperature 30.0 43200 < th dose dependent rect. 3 20
928 384.39 radiation 1.0 14400 > th dose independent rect. 8 10
978 384.46 temperature 30.0 43200 < th dose dependent no NA NA