Os01g0148700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1677, Oryza sativa family protein.
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Os01g0148700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1677, Oryza sativa family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.2 | 0.258 | 12.4 | 0.949 | 0.682 | 0.797 | -0.205 | 0.224 | 0.162 | 18.2 | 22.97 | 14 | -- | -- |
| 30.23 | 0.256 | 12.4 | 0.915 | 0.682 | 0.813 | -0.184 | -- | 0.151 | 18.2 | 22.9 | 13 | -- | -- |
| 30.29 | 0.256 | 12.4 | 0.943 | 0.686 | 0.787 | -- | 0.163 | 0.159 | 18.1 | 22.83 | 13 | -- | -- |
| 30.31 | 0.256 | 12.4 | 0.918 | 0.685 | 0.8 | -- | -- | 0.151 | 18.1 | 22.86 | 13 | -- | -- |
| 45.81 | 0.315 | 12.4 | 0.8 | -- | 1.23 | -- | -0.434 | 0.0821 | -- | 23.98 | 155 | -- | -- |
| 40.25 | 0.297 | 12.4 | 1.07 | 0.916 | -- | 0.252 | -- | 0.272 | 17.1 | -- | -- | -- | -- |
| 40.4 | 0.298 | 12.4 | 1.07 | 0.918 | -- | -- | -- | 0.274 | 17.1 | -- | -- | -- | -- |
| 46.01 | 0.316 | 12.4 | 0.849 | -- | 1.2 | -- | -- | 0.127 | -- | 24.07 | 150 | -- | -- |
| 49.05 | 0.326 | 12.5 | -- | 0.6 | 1.44 | -- | -- | -0.0363 | 18.7 | 14.77 | 80 | -- | -- |
| 84.61 | 0.43 | 12.4 | 1.04 | -- | -- | -- | -- | 0.25 | -- | -- | -- | -- | -- |
| 70.79 | 0.394 | 12.4 | -- | 0.9 | -- | -- | -- | 0.154 | 17.2 | -- | -- | -- | -- |
| 62.1 | 0.367 | 12.5 | -- | -- | 1.77 | -- | -- | -0.0641 | -- | 14.7 | 216 | -- | -- |
| 113.2 | 0.497 | 12.4 | -- | -- | -- | -- | -- | 0.135 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.49 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 2 | 24.58 | temperature | 15 | 90 | > th | dose dependent | sin | 2 | NA |
| 13 | 25.01 | temperature | 30 | 90 | < th | dose dependent | sin | 2 | NA |
| 53 | 25.71 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 15 |
| 103 | 26.66 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 104 | 26.66 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 168 | 27.38 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 199 | 27.62 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 15 |
| 201 | 27.63 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 16 |
| 210 | 27.71 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 14 |
| 227 | 27.83 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 18 |
| 305 | 28.26 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 312 | 28.30 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 327 | 28.39 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 333 | 28.40 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 342 | 28.43 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 362 | 28.52 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 601 | 29.22 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 16 |
| 614 | 29.24 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 621 | 29.27 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 681 | 29.43 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 8 |
| 756 | 29.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 978 | 29.93 | temperature | 25 | 90 | < th | dose independent | rect. | 5 | 16 |